RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 CCDC178Q5BJE1 867 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 FAM47CQ5HY64 1035 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 GPATCH4Q5T3I0 446 aaKnown RBP9.1□□□□□ -0.95
VPS50-204ENST00000438395 RNF207Q6ZRF8 634 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 IQCA1Q86XH1 822 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 FAM126BQ8IXS8 530 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 TMEM47Q9BQJ4 181 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.1□□□□□ -0.95
VPS50-204ENST00000438395 KATNBL1Q9H079 304 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 RANBP17Q9H2T7 1088 aaKnown RBP9.1□□□□□ -0.95
VPS50-204ENST00000438395 TTYH1Q9H313 450 aaPredicted RBP9.1□□□□□ -0.95
VPS50-204ENST00000438395 POLR3EQ9NVU0 708 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 Q9Y3F1 56 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 PLXNA1Q9UIW2 1896 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 MYH4Q9Y623 1939 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 SALL3Q9BXA9 1300 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 ZBBXA8MT70 800 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 HIP1O00291 1037 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 NFIBO00712 420 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 ZNF213O14771 459 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 FGBP02675 491 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 MYL3P08590 195 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 SUPT20HL2P0C7V6 817 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 ACRP10323 421 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 HSPD1P10809 573 aaKnown RBP9.09□□□□□ -0.95
VPS50-204ENST00000438395 PDHBP11177 359 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 NT5C2P49902 561 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 ALDH5A1P51649 535 aaPredicted RBP9.09□□□□□ -0.95
VPS50-204ENST00000438395 DUSP28Q4G0W2 176 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 TMEM240Q5SV17 173 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 AKNAD1Q5T1N1 836 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 TTBK2Q6IQ55 1244 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 BTNL9Q6UXG8 535 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 ZNF365Q70YC5 407 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 RPUSD2Q8IZ73 545 aaKnown RBP9.09□□□□□ -0.95
VPS50-204ENST00000438395 OR6J1Q8NGC5 347 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 SCFD2Q8WU76 684 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 TTC14Q96N46 770 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 WDR11Q9BZH6 1224 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 ZNF576Q9H609 170 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 KAT14Q9H8E8 782 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 IL23AQ9NPF7 189 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 PDGFCQ9NRA1 345 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 TCP11L1Q9NUJ3 509 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 DAXXQ9UER7 740 aaPredicted RBP9.09□□□□□ -0.95
VPS50-204ENST00000438395 GNEQ9Y223 722 aaKnown RBP9.09□□□□□ -0.95
VPS50-204ENST00000438395 NOD1Q9Y239 953 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 DDX49Q9Y6V7 483 aaKnown RBP9.09□□□□□ -0.95
VPS50-204ENST00000438395 SMCHD1A6NHR9 2005 aa9.09□□□□□ -0.95
VPS50-204ENST00000438395 WDR19Q8NEZ3 1342 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 NKRFO15226 690 aaKnown RBP eCLIP9.08□□□□□ -0.96
VPS50-204ENST00000438395 CTAGE5O15320 804 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 FGRP09769 529 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 CCL23P55773 120 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 CHMP4BP1P59074 171 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 PSMC6P62333 389 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 NKX3-2P78367 333 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 ZNF543Q08ER8 600 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 GRIN2CQ14957 1233 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 USH1GQ495M9 461 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 B4GALNT3Q6L9W6 998 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 SLC30A10Q6XR72 485 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 ZNF589Q86UQ0 364 aaPredicted RBP9.08□□□□□ -0.96
VPS50-204ENST00000438395 TBC1D10CQ8IV04 446 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 IL27Q8NEV9 243 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 SYMPKQ92797 1274 aaKnown RBP9.08□□□□□ -0.96
VPS50-204ENST00000438395 YTHDC1Q96MU7 727 aaKnown RBP9.08□□□□□ -0.96
VPS50-204ENST00000438395 UBAC1Q9BSL1 405 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 MTG1Q9BT17 334 aaPredicted RBP9.08□□□□□ -0.96
VPS50-204ENST00000438395 COL25A1Q9BXS0 654 aaPredicted RBP9.08□□□□□ -0.96
VPS50-204ENST00000438395 TRPV6Q9H1D0 765 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 SLC28A3Q9HAS3 691 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 UNC80Q8N2C7 3258 aa9.08□□□□□ -0.96
VPS50-204ENST00000438395 ASTN1O14525 1302 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 ZNFX1Q9P2E3 1918 aaKnown RBP9.07□□□□□ -0.96
VPS50-204ENST00000438395 KPNA6O60684 536 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 CD4P01730 458 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 PFKMP08237 780 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 SDSP20132 328 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 NOVP48745 357 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 RPS6P62753 249 aaKnown RBP9.07□□□□□ -0.96
VPS50-204ENST00000438395 TTLL4Q14679 1199 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 IMMTQ16891 758 aaKnown RBP9.07□□□□□ -0.96
VPS50-204ENST00000438395 TAPT1Q6NXT6 567 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 OTOP2Q7RTS6 562 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 CHD1LQ86WJ1 897 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 SLC43A3Q8NBI5 491 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 RETREG2Q8NC44 543 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 PNMA1Q8ND90 353 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 DNERQ8NFT8 737 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 MORC4Q8TE76 937 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 HERVK_113Q902F9 699 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 PURBQ96QR8 312 aaKnown RBP9.07□□□□□ -0.96
VPS50-204ENST00000438395 NOC4LQ9BVI4 516 aaKnown RBP9.07□□□□□ -0.96
VPS50-204ENST00000438395 PBX4Q9BYU1 374 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 ALDH8A1Q9H2A2 487 aaPredicted RBP9.07□□□□□ -0.96
VPS50-204ENST00000438395 CTNNA3Q9UI47 895 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 SLC4A7Q9Y6M7 1214 aa9.07□□□□□ -0.96
VPS50-204ENST00000438395 TNKSO95271 1327 aa9.06□□□□□ -0.96
VPS50-204ENST00000438395 NEDD4P46934 1319 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms