RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 RNF180Q86T96 592 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 IRF2BP1Q8IU81 584 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 PPM1KQ8N3J5 372 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 LIN37Q96GY3 246 aaPredicted RBP6.46□□□□□ -1.38
VPS54-204ENST00000416400 PHF20Q9BVI0 1012 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 GPR27Q9NS67 375 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 MARCH2Q9P0N8 246 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 DBR1Q9UK59 544 aaKnown RBP6.46□□□□□ -1.38
VPS54-204ENST00000416400 MAPRE3Q9UPY8 281 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 RWDD3Q9Y3V2 267 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 PCDHA2Q9Y5H9 948 aa6.46□□□□□ -1.38
VPS54-204ENST00000416400 LRRC10BA6NIK2 292 aa6.45□□□□□ -1.38
VPS54-204ENST00000416400 AQP7O14520 342 aa6.45□□□□□ -1.38
VPS54-204ENST00000416400 ABLIM1O14639 778 aa6.45□□□□□ -1.38
VPS54-204ENST00000416400 NAT1P18440 290 aa6.45□□□□□ -1.38
VPS54-204ENST00000416400 CYP4F3Q08477 520 aa6.45□□□□□ -1.38
VPS54-204ENST00000416400 LSAMPQ13449 338 aa6.45□□□□□ -1.38
VPS54-204ENST00000416400 MLANAQ16655 118 aa6.45□□□□□ -1.38
VPS54-204ENST00000416400 INF2Q27J81 1249 aa6.45□□□□□ -1.38
VPS54-204ENST00000416400 STYK1Q6J9G0 422 aa6.45□□□□□ -1.38
VPS54-204ENST00000416400 TRMT2BQ96GJ1 504 aaKnown RBP6.45□□□□□ -1.38
VPS54-204ENST00000416400 ZFYVE21Q9BQ24 234 aa6.45□□□□□ -1.38
VPS54-204ENST00000416400 DDX56Q9NY93 547 aaKnown RBP6.45□□□□□ -1.38
VPS54-204ENST00000416400 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS54-204ENST00000416400 TMEFF2Q9UIK5 374 aaPredicted RBP6.45□□□□□ -1.38
VPS54-204ENST00000416400 COA3Q9Y2R0 106 aaPredicted RBP6.45□□□□□ -1.38
VPS54-204ENST00000416400 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.44□□□□□ -1.38
VPS54-204ENST00000416400 ASLP04424 464 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 IGFALSP35858 605 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 KIR3DS1Q14943 382 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 NR1I3Q14994 352 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 RAB3GAP1Q15042 981 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 TESK1Q15569 626 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 TMEM132EQ6IEE7 984 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 CEP68Q76N32 757 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 FGD2Q7Z6J4 655 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 CCDC103Q8IW40 242 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 IFNL3Q8IZI9 196 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 AHI1Q8N157 1196 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 UBR7Q8N806 425 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 RCBTB1Q8NDN9 531 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 SHISA4Q96DD7 197 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 TMEM169Q96HH4 297 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 MAGEB10Q96LZ2 347 aaPredicted RBP6.44□□□□□ -1.38
VPS54-204ENST00000416400 DIRC2Q96SL1 478 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 EPB41L4BQ9H329 900 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 NSUN3Q9H649 340 aaKnown RBP6.44□□□□□ -1.38
VPS54-204ENST00000416400 METTL14Q9HCE5 456 aaKnown RBP6.44□□□□□ -1.38
VPS54-204ENST00000416400 DCP1AQ9NPI6 582 aaPredicted RBP6.44□□□□□ -1.38
VPS54-204ENST00000416400 MCM8Q9UJA3 840 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 NUDT5Q9UKK9 219 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 ATP8A1Q9Y2Q0 1164 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 TRAF6Q9Y4K3 522 aa6.44□□□□□ -1.38
VPS54-204ENST00000416400 TNPO3Q9Y5L0 923 aaKnown RBP6.44□□□□□ -1.38
VPS54-204ENST00000416400 ZNF503-AS2A6NEH8 195 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 NUDT19A8MXV4 375 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 C22orf46C9J442 243 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 MSL3P1P0C860 447 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 FLT3P36888 993 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 BCL6P41182 706 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 CEBPAP49715 358 aaPredicted RBP6.43□□□□□ -1.38
VPS54-204ENST00000416400 ERVFRD-1P60508 538 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 NFKB2Q00653 900 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 MBLAC2Q68D91 279 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 DENND5AQ6IQ26 1287 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 PAQR3Q6TCH7 311 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 ZNF605Q86T29 641 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 MTDHQ86UE4 582 aaKnown RBP6.43□□□□□ -1.38
VPS54-204ENST00000416400 DDX1Q92499 740 aaKnown RBP6.43□□□□□ -1.38
VPS54-204ENST00000416400 SCLYQ96I15 445 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 ALG1Q9BT22 464 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 FAM126AQ9BYI3 521 aaPredicted RBP6.43□□□□□ -1.38
VPS54-204ENST00000416400 TYW1Q9NV66 732 aaKnown RBP6.43□□□□□ -1.38
VPS54-204ENST00000416400 CLDND1Q9NY35 253 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 RNF114Q9Y508 228 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 NPFFR2Q9Y5X5 522 aa6.43□□□□□ -1.38
VPS54-204ENST00000416400 CARMIL2Q6F5E8 1435 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 ASXL2Q76L83 1435 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 RASGRP1O95267 797 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 CRTAMO95727 393 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 CYBBP04839 570 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 LCP1P13796 627 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 NEK4P51957 841 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 GPR85P60893 370 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 ZNF460Q14592 562 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 KIZQ2M2Z5 673 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 WWC2Q6AWC2 1192 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 KCNT2Q6UVM3 1135 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 TEX2Q8IWB9 1127 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 PRPF38AQ8NAV1 312 aaKnown RBP6.42□□□□□ -1.38
VPS54-204ENST00000416400 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.42□□□□□ -1.383e-6■□□□□ 10.5
VPS54-204ENST00000416400 TNFRSF12AQ9NP84 129 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 HOMER2Q9NSB8 354 aa6.42□□□□□ -1.38
VPS54-204ENST00000416400 TCRBV16S1A1N1A0A5B0 115 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 B4E1Z4 1266 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 F8W031 263 aaPredicted RBP6.41□□□□□ -1.38
VPS54-204ENST00000416400 H7BY64 318 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 KPNA6O60684 536 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 JMJD7P0C870 316 aa6.41□□□□□ -1.38
VPS54-204ENST00000416400 CPEP16870 476 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms