RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 XRRA1Q6P2D8 792 aa23.25■■□□□ 1.31
PTCD3-202ENST00000409326 REXO1Q8N1G1 1221 aaKnown RBP23.25■■□□□ 1.31
PTCD3-202ENST00000409326 TMX3Q96JJ7 454 aa23.25■■□□□ 1.31
PTCD3-202ENST00000409326 ALG1Q9BT22 464 aa23.25■■□□□ 1.31
PTCD3-202ENST00000409326 ANO3Q9BYT9 981 aa23.25■■□□□ 1.31
PTCD3-202ENST00000409326 TMEM260Q9NX78 707 aa23.25■■□□□ 1.31
PTCD3-202ENST00000409326 GNEQ9Y223 722 aaKnown RBP23.25■■□□□ 1.31
PTCD3-202ENST00000409326 ADAMTS3O15072 1205 aa23.24■■□□□ 1.31
PTCD3-202ENST00000409326 STAM2O75886 525 aa23.24■■□□□ 1.31
PTCD3-202ENST00000409326 SMPD1P17405 629 aa23.24■■□□□ 1.31
PTCD3-202ENST00000409326 XBP1P17861 261 aa23.24■■□□□ 1.31
PTCD3-202ENST00000409326 MRPS9P82933 396 aaKnown RBP23.24■■□□□ 1.31
PTCD3-202ENST00000409326 DUSP28Q4G0W2 176 aa23.24■■□□□ 1.31
PTCD3-202ENST00000409326 IFFO2Q5TF58 517 aa23.24■■□□□ 1.31
PTCD3-202ENST00000409326 WDR11Q9BZH6 1224 aa23.24■■□□□ 1.31
PTCD3-202ENST00000409326 SYNRGQ9UMZ2 1314 aa23.24■■□□□ 1.31
PTCD3-202ENST00000409326 RGS19P49795 217 aa23.23■■□□□ 1.31
PTCD3-202ENST00000409326 MNX1P50219 401 aaPredicted RBP23.23■■□□□ 1.31
PTCD3-202ENST00000409326 TTLL4Q14679 1199 aa23.23■■□□□ 1.31
PTCD3-202ENST00000409326 JAKMIP3Q5VZ66 844 aa23.23■■□□□ 1.31
PTCD3-202ENST00000409326 GALNT17Q6IS24 598 aa23.23■■□□□ 1.31
PTCD3-202ENST00000409326 SEPT14Q6ZU15 432 aa23.23■■□□□ 1.31
PTCD3-202ENST00000409326 DAGLBQ8NCG7 672 aa23.23■■□□□ 1.31
PTCD3-202ENST00000409326 ARRDC4Q8NCT1 418 aa23.23■■□□□ 1.31
PTCD3-202ENST00000409326 PGBD1Q96JS3 809 aa23.23■■□□□ 1.31
PTCD3-202ENST00000409326 PCDHA4Q9UN74 947 aa23.23■■□□□ 1.31
PTCD3-202ENST00000409326 DOCK5Q9H7D0 1870 aa23.22■■□□□ 1.31
PTCD3-202ENST00000409326 NKRFO15226 690 aaKnown RBP eCLIP23.22■■□□□ 1.31
PTCD3-202ENST00000409326 ADAMTS4O75173 837 aa23.22■■□□□ 1.31
PTCD3-202ENST00000409326 RGS20O76081 388 aa23.22■■□□□ 1.31
PTCD3-202ENST00000409326 FARP2O94887 1054 aaPredicted RBP23.22■■□□□ 1.31
PTCD3-202ENST00000409326 ARIH2O95376 493 aa23.22■■□□□ 1.31
PTCD3-202ENST00000409326 PGK1P00558 417 aa23.22■■□□□ 1.31
PTCD3-202ENST00000409326 HMGN5P82970 282 aaKnown RBP23.22■■□□□ 1.31
PTCD3-202ENST00000409326 NPY5RQ15761 445 aa23.22■■□□□ 1.31
PTCD3-202ENST00000409326 UBE2Q1Q7Z7E8 422 aa23.22■■□□□ 1.31
PTCD3-202ENST00000409326 TLK2Q86UE8 772 aa23.22■■□□□ 1.31
PTCD3-202ENST00000409326 PHF20Q9BVI0 1012 aa23.22■■□□□ 1.31
PTCD3-202ENST00000409326 UPF3AQ9H1J1 476 aaKnown RBP23.22■■□□□ 1.31
PTCD3-202ENST00000409326 Q9Y3F1 56 aa23.22■■□□□ 1.31
PTCD3-202ENST00000409326 DNM1LO00429 736 aa23.21■■□□□ 1.31
PTCD3-202ENST00000409326 SREBF1P36956 1147 aa23.21■■□□□ 1.31
PTCD3-202ENST00000409326 GJA9P57773 515 aa23.21■■□□□ 1.31
PTCD3-202ENST00000409326 LRRC41Q15345 812 aa23.21■■□□□ 1.31
PTCD3-202ENST00000409326 GNPTABQ3T906 1256 aa23.21■■□□□ 1.31
PTCD3-202ENST00000409326 TMEM63BQ5T3F8 832 aa23.21■■□□□ 1.31
PTCD3-202ENST00000409326 CCDC62Q6P9F0 684 aa23.21■■□□□ 1.31
PTCD3-202ENST00000409326 RNF180Q86T96 592 aa23.21■■□□□ 1.31
PTCD3-202ENST00000409326 BLIDQ8IZY5 108 aa23.21■■□□□ 1.31
PTCD3-202ENST00000409326 RASGRP4Q8TDF6 673 aa23.21■■□□□ 1.31
PTCD3-202ENST00000409326 ZFP91Q96JP5 570 aaPredicted RBP23.21■■□□□ 1.31
PTCD3-202ENST00000409326 INPP4AQ96PE3 977 aaPredicted RBP23.21■■□□□ 1.31
PTCD3-202ENST00000409326 SPC25Q9HBM1 224 aa23.21■■□□□ 1.31
PTCD3-202ENST00000409326 KCNJ14Q9UNX9 436 aa23.21■■□□□ 1.31
PTCD3-202ENST00000409326 TXNP10599 105 aaKnown RBP23.2■■□□□ 1.3
PTCD3-202ENST00000409326 CST5P28325 142 aaPredicted RBP23.2■■□□□ 1.3
PTCD3-202ENST00000409326 NKX3-2P78367 333 aa23.2■■□□□ 1.3
PTCD3-202ENST00000409326 GJC2Q5T442 439 aaPredicted RBP23.2■■□□□ 1.3
PTCD3-202ENST00000409326 KCNV1Q6PIU1 500 aa23.2■■□□□ 1.3
PTCD3-202ENST00000409326 DIS3LQ8TF46 1054 aaKnown RBP23.2■■□□□ 1.3
PTCD3-202ENST00000409326 GJB4Q9NTQ9 266 aa23.2■■□□□ 1.3
PTCD3-202ENST00000409326 MRVI1Q9Y6F6 885 aa23.2■■□□□ 1.3
PTCD3-202ENST00000409326 M0R2N6 131 aa23.19■■□□□ 1.3
PTCD3-202ENST00000409326 PTGS1P23219 599 aa23.19■■□□□ 1.3
PTCD3-202ENST00000409326 ICAM3P32942 547 aa23.19■■□□□ 1.3
PTCD3-202ENST00000409326 KLHDC9Q8NEP7 349 aa23.19■■□□□ 1.3
PTCD3-202ENST00000409326 RTEL1Q9NZ71 1219 aa23.19■■□□□ 1.3
PTCD3-202ENST00000409326 DDX41Q9UJV9 622 aaKnown RBP23.19■■□□□ 1.3
PTCD3-202ENST00000409326 ALPK3Q96L96 1907 aa23.18■■□□□ 1.3
PTCD3-202ENST00000409326 MYADML2A6NDP7 307 aa23.18■■□□□ 1.3
PTCD3-202ENST00000409326 KBTBD13C9JR72 458 aa23.18■■□□□ 1.3
PTCD3-202ENST00000409326 CTAGE5O15320 804 aa23.18■■□□□ 1.3
PTCD3-202ENST00000409326 MYCNP04198 464 aaPredicted RBP23.18■■□□□ 1.3
PTCD3-202ENST00000409326 C6orf222P0C671 652 aaPredicted RBP23.18■■□□□ 1.3
PTCD3-202ENST00000409326 TGFB3P10600 412 aa23.18■■□□□ 1.3
PTCD3-202ENST00000409326 ARHGAP4P98171 946 aa23.18■■□□□ 1.3
PTCD3-202ENST00000409326 CRYGNQ8WXF5 182 aa23.18■■□□□ 1.3
PTCD3-202ENST00000409326 PAWRQ96IZ0 340 aaKnown RBP23.18■■□□□ 1.3
PTCD3-202ENST00000409326 AP5M1Q9H0R1 490 aa23.18■■□□□ 1.3
PTCD3-202ENST00000409326 UBIAD1Q9Y5Z9 338 aa23.18■■□□□ 1.3
PTCD3-202ENST00000409326 DYNC1LI2O43237 492 aaPredicted RBP23.17■■□□□ 1.3
PTCD3-202ENST00000409326 FIBPO43427 364 aa23.17■■□□□ 1.3
PTCD3-202ENST00000409326 COL6A1P12109 1028 aa23.17■■□□□ 1.3
PTCD3-202ENST00000409326 TRIM29Q14134 588 aa23.17■■□□□ 1.3
PTCD3-202ENST00000409326 LY6KQ17RY6 165 aa23.17■■□□□ 1.3
PTCD3-202ENST00000409326 NECAB2Q7Z6G3 386 aa23.17■■□□□ 1.3
PTCD3-202ENST00000409326 NLRX1Q86UT6 975 aa23.17■■□□□ 1.3
PTCD3-202ENST00000409326 FAM184AQ8NB25 1140 aa23.17■■□□□ 1.3
PTCD3-202ENST00000409326 OR6J1Q8NGC5 347 aa23.17■■□□□ 1.3
PTCD3-202ENST00000409326 COPS5Q92905 334 aa23.17■■□□□ 1.3
PTCD3-202ENST00000409326 GPRASP2Q96D09 838 aa23.17■■□□□ 1.3
PTCD3-202ENST00000409326 SPATA31C2B4DYI2 1134 aa23.16■■□□□ 1.3
PTCD3-202ENST00000409326 CYP3A4P08684 503 aa23.16■■□□□ 1.3
PTCD3-202ENST00000409326 ITGB5P18084 799 aa23.16■■□□□ 1.3
PTCD3-202ENST00000409326 IRX5P78411 483 aaPredicted RBP23.16■■□□□ 1.3
PTCD3-202ENST00000409326 SEMA3FQ13275 785 aa23.16■■□□□ 1.3
PTCD3-202ENST00000409326 CCSAPQ6IQ19 270 aaPredicted RBP23.16■■□□□ 1.3
PTCD3-202ENST00000409326 TSEN34Q9BSV6 310 aaKnown RBP23.16■■□□□ 1.3
PTCD3-202ENST00000409326 C11orf49Q9H6J7 331 aa23.16■■□□□ 1.3
PTCD3-202ENST00000409326 JADE2Q9NQC1 790 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms