RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SPATA33Q96N06 139 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 NUDT12Q9BQG2 462 aa11.47□□□□□ -0.57
COL6A3-205ENST00000392004 TOMM70O94826 608 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 GGPS1O95749 300 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 LRMPQ12912 555 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-205ENST00000392004 HS2ST1Q7LGA3 356 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 NKX2-3Q8TAU0 364 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 IFT74Q96LB3 600 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 BHMT2Q9H2M3 363 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 DEF6Q9H4E7 631 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 HPS5Q9UPZ3 1129 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 C4BP0C0L5 1744 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 AP5Z1O43299 807 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 CTSHP09668 335 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 PFKFB1P16118 471 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 HOXD10P28358 340 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 PTPN14Q15678 1187 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 GJC2Q5T442 439 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-205ENST00000392004 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-205ENST00000392004 SESTD1Q86VW0 696 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 AOPEPQ8N6M6 819 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 PAF1Q8N7H5 531 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 CBX8Q9HC52 389 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 SLC39A2Q9NP94 309 aa11.46□□□□□ -0.57
COL6A3-205ENST00000392004 IPO5O00410 1097 aaKnown RBP11.46□□□□□ -0.58
COL6A3-205ENST00000392004 DNM2P50570 870 aa11.46□□□□□ -0.58
COL6A3-205ENST00000392004 ZNF75DP51815 510 aa11.46□□□□□ -0.58
COL6A3-205ENST00000392004 FAM117BQ6P1L5 589 aa11.46□□□□□ -0.58
COL6A3-205ENST00000392004 CYP2W1Q8TAV3 490 aa11.46□□□□□ -0.58
COL6A3-205ENST00000392004 SPATC1LQ9H0A9 340 aa11.46□□□□□ -0.58
COL6A3-205ENST00000392004 ANKFY1Q9P2R3 1169 aa11.46□□□□□ -0.58
COL6A3-205ENST00000392004 PPP1R9AQ9ULJ8 1098 aa11.46□□□□□ -0.58
COL6A3-205ENST00000392004 NDUFA8P51970 172 aa11.45□□□□□ -0.58
COL6A3-205ENST00000392004 BIRC3Q13489 604 aa11.45□□□□□ -0.58
COL6A3-205ENST00000392004 PPFIBP1Q86W92 1011 aa11.45□□□□□ -0.58
COL6A3-205ENST00000392004 ZNF397Q8NF99 534 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-205ENST00000392004 ZC3H15Q8WU90 426 aaKnown RBP11.45□□□□□ -0.58
COL6A3-205ENST00000392004 DNAJC18Q9H819 358 aa11.45□□□□□ -0.58
COL6A3-205ENST00000392004 M0QZ92 97 aa11.45□□□□□ -0.58
COL6A3-205ENST00000392004 MFSD14CQ5VZR4 134 aa11.45□□□□□ -0.58
COL6A3-205ENST00000392004 CACNA2D4Q7Z3S7 1137 aa11.45□□□□□ -0.58
COL6A3-205ENST00000392004 ANAPC4Q9UJX5 808 aa11.45□□□□□ -0.58
COL6A3-205ENST00000392004 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.45□□□□□ -0.58
COL6A3-205ENST00000392004 PCDHB13Q9Y5F0 798 aa11.45□□□□□ -0.58
COL6A3-205ENST00000392004 N4BP3O15049 544 aa11.45□□□□□ -0.58
COL6A3-205ENST00000392004 CTDNEP1O95476 244 aa11.45□□□□□ -0.58
COL6A3-205ENST00000392004 SSR1P43307 286 aaKnown RBP11.45□□□□□ -0.58
COL6A3-205ENST00000392004 DEPTORQ8TB45 409 aa11.45□□□□□ -0.58
COL6A3-205ENST00000392004 FAM208AQ9UK61 1670 aaKnown RBP11.45□□□□□ -0.58
COL6A3-205ENST00000392004 FDPSP14324 419 aaKnown RBP11.44□□□□□ -0.58
COL6A3-205ENST00000392004 CYP2J2P51589 502 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 TBC1D8BQ0IIM8 1120 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 MCM6Q14566 821 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 RRP1BQ14684 758 aaKnown RBP11.44□□□□□ -0.58
COL6A3-205ENST00000392004 SEC23AQ15436 765 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 TMED8Q6PL24 325 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-205ENST00000392004 CCDC65Q8IXS2 484 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 CCDC127Q96BQ5 260 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 FOXP1Q9H334 677 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-205ENST00000392004 GABBR1Q9UBS5 961 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 PSMA7O14818 248 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 SMTNP53814 917 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 JAG1P78504 1218 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 FAM160A1Q05DH4 1040 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 PPATQ06203 517 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 PTPN21Q16825 1174 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 SLC7A3Q8WY07 619 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 IL17RAQ96F46 866 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 EHD4Q9H223 541 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 DDX41Q9UJV9 622 aaKnown RBP11.44□□□□□ -0.58
COL6A3-205ENST00000392004 RFX7Q2KHR2 1363 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 SCN11AQ9UI33 1791 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 POTEFA5A3E0 1075 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 CUTAO60888 179 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 ODF2Q5BJF6 829 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 POTEGQ6S5H5 508 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 POTEEQ6S8J3 1075 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 STXBP4Q6ZWJ1 553 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 EMILIN3Q9NT22 766 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 NRBP1Q9UHY1 535 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 POTEB3A0JP26 581 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 POTECB2RU33 542 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 BTBD19C9JJ37 291 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 KRT19P08727 400 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 ELNP15502 786 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 NOGQ13253 232 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 MUM1L1Q5H9M0 696 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 ODR4Q5SWX8 454 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 POTEBQ6S5H4 581 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 TMEM106CQ9BVX2 250 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 PRKAG2Q9UGJ0 569 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 RABGAP1Q9Y3P9 1069 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 PPP2R3BQ9Y5P8 575 aa11.44□□□□□ -0.58
COL6A3-205ENST00000392004 VWA5AO00534 786 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 CYTH3O43739 400 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 CAVIN2O95810 425 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 KANK3Q6NY19 840 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 KIAA1683Q9H0B3 1180 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 TMX1Q9H3N1 280 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms