RNA–Protein interactions for RNA: ENST00000381575.6

SHOX-202, Transcript of short stature homeobox, humanhuman

TSL 1 (best) BASIC

Gene SHOX, Length 1,351 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-202ENST00000381575 STXBP2Q15833 593 aa16.46■□□□□ 0.23
SHOX-202ENST00000381575 SKAP1Q86WV1 359 aa16.46■□□□□ 0.23
SHOX-202ENST00000381575 IL31RAQ8NI17 732 aa16.46■□□□□ 0.23
SHOX-202ENST00000381575 MTMR8Q96EF0 704 aa16.46■□□□□ 0.23
SHOX-202ENST00000381575 SEZ6LQ9BYH1 1024 aa16.46■□□□□ 0.23
SHOX-202ENST00000381575 NKX2-4Q9H2Z4 354 aa16.46■□□□□ 0.23
SHOX-202ENST00000381575 YBX2Q9Y2T7 364 aaKnown RBP16.46■□□□□ 0.23
SHOX-202ENST00000381575 PCDHA1Q9Y5I3 950 aa16.46■□□□□ 0.23
SHOX-202ENST00000381575 GH1P01241 217 aa16.45■□□□□ 0.22
SHOX-202ENST00000381575 NR3C2P08235 984 aa16.45■□□□□ 0.22
SHOX-202ENST00000381575 MYCLP12524 364 aaPredicted RBP16.45■□□□□ 0.22
SHOX-202ENST00000381575 HSD17B4P51659 736 aa16.45■□□□□ 0.22
SHOX-202ENST00000381575 COL9A3Q14050 684 aaPredicted RBP16.45■□□□□ 0.22
SHOX-202ENST00000381575 WTAPQ15007 396 aa16.45■□□□□ 0.22
SHOX-202ENST00000381575 USP38Q8NB14 1042 aa16.45■□□□□ 0.22
SHOX-202ENST00000381575 MYL10Q9BUA6 226 aa16.45■□□□□ 0.22
SHOX-202ENST00000381575 PRDM12Q9H4Q4 367 aa16.45■□□□□ 0.22
SHOX-202ENST00000381575 RBM8AQ9Y5S9 174 aaKnown RBP16.45■□□□□ 0.22
SHOX-202ENST00000381575 ERICH2A1L162 156 aa16.44■□□□□ 0.22
SHOX-202ENST00000381575 CYTH3O43739 400 aa16.44■□□□□ 0.22
SHOX-202ENST00000381575 SUPT20HL2P0C7V6 817 aa16.44■□□□□ 0.22
SHOX-202ENST00000381575 MYOGP15173 224 aa16.44■□□□□ 0.22
SHOX-202ENST00000381575 TMEM67Q5HYA8 995 aa16.44■□□□□ 0.22
SHOX-202ENST00000381575 NFRKBQ6P4R8 1299 aa16.44■□□□□ 0.22
SHOX-202ENST00000381575 NCOA7Q8NI08 942 aa16.44■□□□□ 0.22
SHOX-202ENST00000381575 IWS1Q96ST2 819 aa16.44■□□□□ 0.22
SHOX-202ENST00000381575 COL25A1Q9BXS0 654 aaPredicted RBP16.44■□□□□ 0.22
SHOX-202ENST00000381575 MRVI1Q9Y6F6 885 aa16.44■□□□□ 0.22
SHOX-202ENST00000381575 KPNA6O60684 536 aa16.43■□□□□ 0.22
SHOX-202ENST00000381575 ZNF286BP0CG31 522 aa16.43■□□□□ 0.22
SHOX-202ENST00000381575 FCHSD1Q86WN1 690 aa16.43■□□□□ 0.22
SHOX-202ENST00000381575 MB21D2Q8IYB1 491 aaPredicted RBP16.43■□□□□ 0.22
SHOX-202ENST00000381575 KAT2BQ92831 832 aa16.43■□□□□ 0.22
SHOX-202ENST00000381575 GPKOWQ92917 476 aaPredicted RBP eCLIP16.43■□□□□ 0.22
SHOX-202ENST00000381575 PDCD2LQ9BRP1 358 aa16.43■□□□□ 0.22
SHOX-202ENST00000381575 MTIF3Q9H2K0 278 aaKnown RBP16.43■□□□□ 0.22
SHOX-202ENST00000381575 RIOX1Q9H6W3 641 aa16.43■□□□□ 0.22
SHOX-202ENST00000381575 MSRAQ9UJ68 235 aa16.43■□□□□ 0.22
SHOX-202ENST00000381575 DDX41Q9UJV9 622 aaKnown RBP16.43■□□□□ 0.22
SHOX-202ENST00000381575 NOD1Q9Y239 953 aa16.43■□□□□ 0.22
SHOX-202ENST00000381575 PRRC2BQ5JSZ5 2229 aaKnown RBP16.42■□□□□ 0.22
SHOX-202ENST00000381575 RGS20O76081 388 aa16.42■□□□□ 0.22
SHOX-202ENST00000381575 TROAPQ12815 778 aa16.42■□□□□ 0.22
SHOX-202ENST00000381575 GDF6Q6KF10 455 aaPredicted RBP16.42■□□□□ 0.22
SHOX-202ENST00000381575 RPUSD2Q8IZ73 545 aaKnown RBP16.42■□□□□ 0.22
SHOX-202ENST00000381575 PPM1EQ8WY54 764 aa16.42■□□□□ 0.22
SHOX-202ENST00000381575 MAP4K1Q92918 833 aa16.42■□□□□ 0.22
SHOX-202ENST00000381575 ALG1Q9BT22 464 aa16.42■□□□□ 0.22
SHOX-202ENST00000381575 SLC4A7Q9Y6M7 1214 aa16.42■□□□□ 0.22
SHOX-202ENST00000381575 NCOR1O75376 2440 aa16.42■□□□□ 0.22
SHOX-202ENST00000381575 EIF3JO75822 258 aaKnown RBP16.41■□□□□ 0.22
SHOX-202ENST00000381575 SART3Q15020 963 aaKnown RBP16.41■□□□□ 0.22
SHOX-202ENST00000381575 PGM5Q15124 567 aa16.41■□□□□ 0.22
SHOX-202ENST00000381575 RAB30Q15771 203 aa16.41■□□□□ 0.22
SHOX-202ENST00000381575 PTGISQ16647 500 aa16.41■□□□□ 0.22
SHOX-202ENST00000381575 CATIPQ7Z7H3 387 aa16.41■□□□□ 0.22
SHOX-202ENST00000381575 RAB11FIP4Q86YS3 637 aa16.41■□□□□ 0.22
SHOX-202ENST00000381575 IGDCC4Q8TDY8 1250 aa16.41■□□□□ 0.22
SHOX-202ENST00000381575 CTAGE1Q96RT6 745 aa16.41■□□□□ 0.22
SHOX-202ENST00000381575 MAF1Q9H063 256 aa16.41■□□□□ 0.22
SHOX-202ENST00000381575 PRDM6Q9NQX0 595 aa16.41■□□□□ 0.22
SHOX-202ENST00000381575 CASTP20810 708 aaKnown RBP16.4■□□□□ 0.22
SHOX-202ENST00000381575 PSEN2P49810 448 aa16.4■□□□□ 0.22
SHOX-202ENST00000381575 GHRHRQ02643 423 aa16.4■□□□□ 0.22
SHOX-202ENST00000381575 DHX37Q8IY37 1157 aaKnown RBP16.4■□□□□ 0.22
SHOX-202ENST00000381575 FTOQ9C0B1 505 aaKnown RBP eCLIP16.4■□□□□ 0.22
SHOX-202ENST00000381575 LSG1Q9H089 658 aaKnown RBP16.4■□□□□ 0.22
SHOX-202ENST00000381575 LY9Q9HBG7 655 aa16.4■□□□□ 0.22
SHOX-202ENST00000381575 PNMA6FA0A0J9YX94 578 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 GCOM1H8Y6P7 765 aaPredicted RBP16.39■□□□□ 0.21
SHOX-202ENST00000381575 PRC1O43663 620 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 GGPS1O95749 300 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 IQCF3P0C7M6 154 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 POLR2MP0CAP2 368 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 ATP2A2P16615 1042 aaKnown RBP16.39■□□□□ 0.21
SHOX-202ENST00000381575 RXRAP19793 462 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 SP2Q02086 613 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 PTPN11Q06124 597 aaPredicted RBP16.39■□□□□ 0.21
SHOX-202ENST00000381575 ADGRE1Q14246 886 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 DGKDQ16760 1214 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 ZNF654Q8IZM8 581 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 RETREG2Q8NC44 543 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 DHX38Q92620 1227 aaKnown RBP16.39■□□□□ 0.21
SHOX-202ENST00000381575 KAT6AQ92794 2004 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 GAS2L1Q99501 681 aaPredicted RBP16.39■□□□□ 0.21
SHOX-202ENST00000381575 LRRC2Q9BYS8 371 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 BCAS3Q9H6U6 928 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 HDAC6Q9UBN7 1215 aa16.39■□□□□ 0.21
SHOX-202ENST00000381575 PITPNM1O00562 1244 aa16.38■□□□□ 0.21
SHOX-202ENST00000381575 PLEKHA8P1O95397 391 aa16.38■□□□□ 0.21
SHOX-202ENST00000381575 UBA1P22314 1058 aaKnown RBP16.38■□□□□ 0.21
SHOX-202ENST00000381575 IGFBP4P22692 258 aa16.38■□□□□ 0.21
SHOX-202ENST00000381575 CCND2P30279 289 aa16.38■□□□□ 0.21
SHOX-202ENST00000381575 ZNF200P98182 395 aaPredicted RBP16.38■□□□□ 0.21
SHOX-202ENST00000381575 BFSP2Q13515 415 aa16.38■□□□□ 0.21
SHOX-202ENST00000381575 MFSD10Q14728 455 aa16.38■□□□□ 0.21
SHOX-202ENST00000381575 CCDC85BQ15834 202 aaPredicted RBP16.38■□□□□ 0.21
SHOX-202ENST00000381575 PPP2R2DQ66LE6 453 aa16.38■□□□□ 0.21
SHOX-202ENST00000381575 CASC1Q6TDU7 716 aa16.38■□□□□ 0.21
SHOX-202ENST00000381575 VSIG10LQ86VR7 867 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms