RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 STXBP3O00186 592 aa20.44■□□□□ 0.86
CCDC3-201ENST00000378825 HEXIM1O94992 359 aaKnown RBP20.44■□□□□ 0.86
CCDC3-201ENST00000378825 HNRNPH3P31942 346 aaKnown RBP20.44■□□□□ 0.86
CCDC3-201ENST00000378825 MNAT1P51948 309 aa20.44■□□□□ 0.86
CCDC3-201ENST00000378825 EMBQ6PCB8 327 aa20.44■□□□□ 0.86
CCDC3-201ENST00000378825 KIF5BP33176 963 aa20.44■□□□□ 0.86
CCDC3-201ENST00000378825 SKOR1P84550 965 aa20.44■□□□□ 0.86
CCDC3-201ENST00000378825 TDRD12Q587J7 1177 aaKnown RBP20.44■□□□□ 0.86
CCDC3-201ENST00000378825 FIGNQ5HY92 759 aa20.44■□□□□ 0.86
CCDC3-201ENST00000378825 GBP6Q6ZN66 633 aa20.44■□□□□ 0.86
CCDC3-201ENST00000378825 UBE4AQ14139 1066 aa20.43■□□□□ 0.86
CCDC3-201ENST00000378825 IQCKQ8N0W5 287 aa20.43■□□□□ 0.86
CCDC3-201ENST00000378825 ALS2CR12Q96Q35 445 aa20.43■□□□□ 0.86
CCDC3-201ENST00000378825 GOLPH3Q9H4A6 298 aa20.43■□□□□ 0.86
CCDC3-201ENST00000378825 TCP11L1Q9NUJ3 509 aa20.43■□□□□ 0.86
CCDC3-201ENST00000378825 MYH1P12882 1939 aa20.43■□□□□ 0.86
CCDC3-201ENST00000378825 MYMKA6NI61 221 aa20.43■□□□□ 0.86
CCDC3-201ENST00000378825 EPB41P11171 864 aaKnown RBP20.43■□□□□ 0.86
CCDC3-201ENST00000378825 LSP1P33241 339 aa20.43■□□□□ 0.86
CCDC3-201ENST00000378825 PAFAH1B1P43034 410 aa20.43■□□□□ 0.86
CCDC3-201ENST00000378825 ARID5AQ03989 594 aa20.43■□□□□ 0.86
CCDC3-201ENST00000378825 FAM114A1Q8IWE2 563 aa20.43■□□□□ 0.86
CCDC3-201ENST00000378825 CAVIN3Q969G5 261 aa20.43■□□□□ 0.86
CCDC3-201ENST00000378825 KRT12Q99456 494 aa20.43■□□□□ 0.86
CCDC3-201ENST00000378825 OR52Z1P0C646 297 aa20.42■□□□□ 0.86
CCDC3-201ENST00000378825 PRLRP16471 622 aa20.42■□□□□ 0.86
CCDC3-201ENST00000378825 ITIH3Q06033 890 aa20.42■□□□□ 0.86
CCDC3-201ENST00000378825 HGSNATQ68CP4 663 aa20.42■□□□□ 0.86
CCDC3-201ENST00000378825 CENPPQ6IPU0 288 aa20.42■□□□□ 0.86
CCDC3-201ENST00000378825 CASKIN2Q8WXE0 1202 aa20.42■□□□□ 0.86
CCDC3-201ENST00000378825 C7orf25Q9BPX7 421 aa20.42■□□□□ 0.86
CCDC3-201ENST00000378825 TLR2O60603 784 aa20.42■□□□□ 0.86
CCDC3-201ENST00000378825 PALMO75781 387 aa20.42■□□□□ 0.86
CCDC3-201ENST00000378825 SF3B3Q15393 1217 aaKnown RBP20.42■□□□□ 0.86
CCDC3-201ENST00000378825 ASTE1Q2TB18 679 aaPredicted RBP20.42■□□□□ 0.86
CCDC3-201ENST00000378825 CFAP58Q5T655 872 aa20.42■□□□□ 0.86
CCDC3-201ENST00000378825 ALS2CLQ60I27 953 aa20.42■□□□□ 0.86
CCDC3-201ENST00000378825 POTEDQ86YR6 584 aa20.42■□□□□ 0.86
CCDC3-201ENST00000378825 UIMC1Q96RL1 719 aa20.42■□□□□ 0.86
CCDC3-201ENST00000378825 PACSIN1Q9BY11 444 aa20.42■□□□□ 0.86
CCDC3-201ENST00000378825 LCA5LO95447 670 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 TXKP42681 527 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 FNTAP49354 379 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 KCNMA1Q12791 1236 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 TXNRD3Q86VQ6 643 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 TANGO6Q9C0B7 1094 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 YY1AP1Q9H869 796 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 STX8Q9UNK0 236 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 WNK3Q9BYP7 1800 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 BACH1O14867 736 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 HDLBPQ00341 1268 aaKnown RBP20.41■□□□□ 0.86
CCDC3-201ENST00000378825 NAA35Q5VZE5 725 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 CLEC4GQ6UXB4 293 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 AMIGO3Q86WK7 504 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 OR2W6PQ8NHA6 318 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 NUDT12Q9BQG2 462 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 CRNKL1Q9BZJ0 848 aaKnown RBP20.41■□□□□ 0.86
CCDC3-201ENST00000378825 VAT1LQ9HCJ6 419 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 BLOC1S4Q9NUP1 217 aa20.41■□□□□ 0.86
CCDC3-201ENST00000378825 MYL1P05976 194 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 GJA10Q969M2 543 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 NCAPGQ9BPX3 1015 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 CENPHQ9H3R5 247 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 TMEM260Q9NX78 707 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 BARHL2Q9NY43 387 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 KLRC1P26715 233 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 HPDP32754 393 aaPredicted RBP20.4■□□□□ 0.86
CCDC3-201ENST00000378825 TMED8Q6PL24 325 aaPredicted RBP20.4■□□□□ 0.86
CCDC3-201ENST00000378825 GDF3Q9NR23 364 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 PCP11498 1178 aaKnown RBP20.4■□□□□ 0.86
CCDC3-201ENST00000378825 RPS8P62241 208 aaKnown RBP20.4■□□□□ 0.86
CCDC3-201ENST00000378825 EHHADHQ08426 723 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 GRB10Q13322 594 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 PDXDC1Q6P996 788 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 CACNA2D4Q7Z3S7 1137 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 KCNK18Q7Z418 384 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 KLHL7Q8IXQ5 586 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 NOX5Q96PH1 765 aa20.4■□□□□ 0.86
CCDC3-201ENST00000378825 MAN2A1Q16706 1144 aa20.39■□□□□ 0.85
CCDC3-201ENST00000378825 NBPF5PQ86XG9 351 aaPredicted RBP20.39■□□□□ 0.85
CCDC3-201ENST00000378825 OTUD6BQ8N6M0 293 aa20.39■□□□□ 0.85
CCDC3-201ENST00000378825 SH3GLB2Q9NR46 395 aa20.39■□□□□ 0.85
CCDC3-201ENST00000378825 BIN2Q9UBW5 565 aaPredicted RBP20.39■□□□□ 0.85
CCDC3-201ENST00000378825 NR1D1P20393 614 aa20.39■□□□□ 0.85
CCDC3-201ENST00000378825 NAPAP54920 295 aa20.39■□□□□ 0.85
CCDC3-201ENST00000378825 GRM4Q14833 912 aa20.39■□□□□ 0.85
CCDC3-201ENST00000378825 CFAP221Q4G0U5 840 aa20.39■□□□□ 0.85
CCDC3-201ENST00000378825 LRRC55Q6ZSA7 311 aa20.39■□□□□ 0.85
CCDC3-201ENST00000378825 DDX42Q86XP3 938 aaKnown RBP eCLIP20.39■□□□□ 0.85
CCDC3-201ENST00000378825 CCDC47Q96A33 483 aaKnown RBP20.39■□□□□ 0.85
CCDC3-201ENST00000378825 FGFBP2Q9BYJ0 223 aa20.39■□□□□ 0.85
CCDC3-201ENST00000378825 POTEMA6NI47 508 aa20.38■□□□□ 0.85
CCDC3-201ENST00000378825 H0YHG0 523 aa20.38■□□□□ 0.85
CCDC3-201ENST00000378825 MEFVO15553 781 aaPredicted RBP20.38■□□□□ 0.85
CCDC3-201ENST00000378825 CNNM4Q6P4Q7 775 aa20.38■□□□□ 0.85
CCDC3-201ENST00000378825 CNPY4Q8N129 248 aa20.38■□□□□ 0.85
CCDC3-201ENST00000378825 ZNF473Q8WTR7 871 aaKnown RBP20.38■□□□□ 0.85
CCDC3-201ENST00000378825 GEMIN8Q9NWZ8 242 aaKnown RBP20.38■□□□□ 0.85
CCDC3-201ENST00000378825 FAM170AA1A519 330 aa20.38■□□□□ 0.85
CCDC3-201ENST00000378825 GNPATO15228 680 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms