RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 SNX29Q8TEQ0 813 aa28.1■■■□□ 2.09
C9orf40-201ENST00000376854 MTMR4Q9NYA4 1195 aa28.1■■■□□ 2.09
C9orf40-201ENST00000376854 PCDHA13Q9Y5I0 950 aa28.1■■■□□ 2.09
C9orf40-201ENST00000376854 UBR3Q6ZT12 1888 aa28.1■■■□□ 2.09
C9orf40-201ENST00000376854 GAKO14976 1311 aa28.1■■■□□ 2.09
C9orf40-201ENST00000376854 ABCB11O95342 1321 aa28.1■■■□□ 2.09
C9orf40-201ENST00000376854 PHACTR2O75167 634 aa28.1■■■□□ 2.09
C9orf40-201ENST00000376854 LRRC63Q05C16 580 aa28.1■■■□□ 2.09
C9orf40-201ENST00000376854 PDIA5Q14554 519 aa28.1■■■□□ 2.09
C9orf40-201ENST00000376854 ASPRV1Q53RT3 343 aa28.1■■■□□ 2.09
C9orf40-201ENST00000376854 CCDC84Q86UT8 332 aaPredicted RBP28.1■■■□□ 2.09
C9orf40-201ENST00000376854 SMCR8Q8TEV9 937 aaPredicted RBP28.1■■■□□ 2.09
C9orf40-201ENST00000376854 KIF11P52732 1056 aa28.09■■■□□ 2.09
C9orf40-201ENST00000376854 KRT79Q5XKE5 535 aa28.09■■■□□ 2.09
C9orf40-201ENST00000376854 NUDT12Q9BQG2 462 aa28.09■■■□□ 2.09
C9orf40-201ENST00000376854 DEF6Q9H4E7 631 aa28.09■■■□□ 2.09
C9orf40-201ENST00000376854 JRKLQ9Y4A0 524 aa28.09■■■□□ 2.09
C9orf40-201ENST00000376854 AFF2P51816 1311 aa28.09■■■□□ 2.09
C9orf40-201ENST00000376854 TACC1O75410 805 aa28.09■■■□□ 2.09
C9orf40-201ENST00000376854 EIF4A3P38919 411 aaKnown RBP28.09■■■□□ 2.09
C9orf40-201ENST00000376854 IQCEQ6IPM2 695 aa28.09■■■□□ 2.09
C9orf40-201ENST00000376854 DDX12PQ92771 950 aa28.09■■■□□ 2.09
C9orf40-201ENST00000376854 SH2D4AQ9H788 454 aa28.09■■■□□ 2.09
C9orf40-201ENST00000376854 C6orf229H3BNL8 230 aa28.08■■■□□ 2.09
C9orf40-201ENST00000376854 ACTN2P35609 894 aa28.08■■■□□ 2.09
C9orf40-201ENST00000376854 SNX12Q9UMY4 172 aa28.08■■■□□ 2.09
C9orf40-201ENST00000376854 ZMYND10O75800 440 aa28.08■■■□□ 2.09
C9orf40-201ENST00000376854 TNNI2P48788 182 aa28.08■■■□□ 2.09
C9orf40-201ENST00000376854 EIF6P56537 245 aaKnown RBP28.08■■■□□ 2.09
C9orf40-201ENST00000376854 LRRC27Q9C0I9 530 aa28.08■■■□□ 2.09
C9orf40-201ENST00000376854 GPCPD1Q9NPB8 672 aa28.08■■■□□ 2.09
C9orf40-201ENST00000376854 CAPN6Q9Y6Q1 641 aa28.08■■■□□ 2.09
C9orf40-201ENST00000376854 CAPN2P17655 700 aa28.07■■■□□ 2.08
C9orf40-201ENST00000376854 C2orf54Q08AI8 447 aa28.07■■■□□ 2.08
C9orf40-201ENST00000376854 LRRC55Q6ZSA7 311 aa28.07■■■□□ 2.08
C9orf40-201ENST00000376854 RRAGAQ7L523 313 aa28.07■■■□□ 2.08
C9orf40-201ENST00000376854 KCNK18Q7Z418 384 aa28.07■■■□□ 2.08
C9orf40-201ENST00000376854 MLXIPQ9HAP2 919 aa28.07■■■□□ 2.08
C9orf40-201ENST00000376854 PLIN4Q96Q06 1357 aa28.07■■■□□ 2.08
C9orf40-201ENST00000376854 LRRC53A6NM62 1247 aa28.07■■■□□ 2.08
C9orf40-201ENST00000376854 AARSP49588 968 aaKnown RBP eCLIP28.07■■■□□ 2.08
C9orf40-201ENST00000376854 TMEM119Q4V9L6 283 aa28.07■■■□□ 2.08
C9orf40-201ENST00000376854 TBC1D22AQ8WUA7 517 aa28.07■■■□□ 2.08
C9orf40-201ENST00000376854 HPCAL4Q9UM19 191 aa28.07■■■□□ 2.08
C9orf40-201ENST00000376854 AKR1B10O60218 316 aa28.06■■■□□ 2.08
C9orf40-201ENST00000376854 BBOX1O75936 387 aa28.06■■■□□ 2.08
C9orf40-201ENST00000376854 LCA5LO95447 670 aa28.06■■■□□ 2.08
C9orf40-201ENST00000376854 PSMD2Q13200 908 aa28.06■■■□□ 2.08
C9orf40-201ENST00000376854 PICALMQ13492 652 aa28.06■■■□□ 2.08
C9orf40-201ENST00000376854 LRRC41Q15345 812 aa28.06■■■□□ 2.08
C9orf40-201ENST00000376854 TSG101Q99816 390 aa28.06■■■□□ 2.08
C9orf40-201ENST00000376854 PODXL2Q9NZ53 605 aa28.06■■■□□ 2.08
C9orf40-201ENST00000376854 MOCS3O95396 460 aa28.06■■■□□ 2.08
C9orf40-201ENST00000376854 SNHG28P0DPA3 235 aa28.06■■■□□ 2.08
C9orf40-201ENST00000376854 LEKR1Q6ZMV7 388 aa28.06■■■□□ 2.08
C9orf40-201ENST00000376854 CREG2Q8IUH2 290 aa28.06■■■□□ 2.08
C9orf40-201ENST00000376854 GLIS3Q8NEA6 775 aa28.06■■■□□ 2.08
C9orf40-201ENST00000376854 RIMBP2O15034 1052 aa28.05■■■□□ 2.08
C9orf40-201ENST00000376854 ONECUT3O60422 494 aaPredicted RBP28.05■■■□□ 2.08
C9orf40-201ENST00000376854 AKR1B1P15121 316 aa28.05■■■□□ 2.08
C9orf40-201ENST00000376854 ERCC3P19447 782 aa28.05■■■□□ 2.08
C9orf40-201ENST00000376854 GTF2IP78347 998 aa28.05■■■□□ 2.08
C9orf40-201ENST00000376854 EHHADHQ08426 723 aa28.05■■■□□ 2.08
C9orf40-201ENST00000376854 RAD51AP2Q09MP3 1159 aa28.05■■■□□ 2.08
C9orf40-201ENST00000376854 CLEC10AQ8IUN9 316 aa28.05■■■□□ 2.08
C9orf40-201ENST00000376854 COG1Q8WTW3 980 aa28.05■■■□□ 2.08
C9orf40-201ENST00000376854 DRC1Q96MC2 740 aa28.05■■■□□ 2.08
C9orf40-201ENST00000376854 RIC8AQ9NPQ8 531 aa28.05■■■□□ 2.08
C9orf40-201ENST00000376854 CWC15Q9P013 229 aaKnown RBP28.05■■■□□ 2.08
C9orf40-201ENST00000376854 DAGLAQ9Y4D2 1042 aa28.05■■■□□ 2.08
C9orf40-201ENST00000376854 TULP2O00295 520 aa28.04■■■□□ 2.08
C9orf40-201ENST00000376854 HOXA7P31268 230 aaPredicted RBP28.04■■■□□ 2.08
C9orf40-201ENST00000376854 UBE2SQ16763 222 aa28.04■■■□□ 2.08
C9orf40-201ENST00000376854 DPP8Q6V1X1 898 aaPredicted RBP28.04■■■□□ 2.08
C9orf40-201ENST00000376854 GPIHBP1Q8IV16 184 aa28.04■■■□□ 2.08
C9orf40-201ENST00000376854 BAP1Q92560 729 aa28.04■■■□□ 2.08
C9orf40-201ENST00000376854 ATP2B2Q01814 1243 aa28.04■■■□□ 2.08
C9orf40-201ENST00000376854 PPP4R3AQ6IN85 833 aa28.04■■■□□ 2.08
C9orf40-201ENST00000376854 CCNI2Q6ZMN8 369 aaPredicted RBP28.04■■■□□ 2.08
C9orf40-201ENST00000376854 PNMA6FA0A0J9YX94 578 aa28.03■■■□□ 2.08
C9orf40-201ENST00000376854 F8W031 263 aaPredicted RBP28.03■■■□□ 2.08
C9orf40-201ENST00000376854 POLRMTO00411 1230 aaKnown RBP28.03■■■□□ 2.08
C9orf40-201ENST00000376854 RNF40O75150 1001 aa28.03■■■□□ 2.08
C9orf40-201ENST00000376854 SYF2O95926 243 aaKnown RBP28.03■■■□□ 2.08
C9orf40-201ENST00000376854 HOXA10P31260 410 aaPredicted RBP28.03■■■□□ 2.08
C9orf40-201ENST00000376854 GABPAQ06546 454 aa28.03■■■□□ 2.08
C9orf40-201ENST00000376854 CCDC70Q6NSX1 233 aa28.03■■■□□ 2.08
C9orf40-201ENST00000376854 PPP1R18Q6NYC8 613 aa28.03■■■□□ 2.08
C9orf40-201ENST00000376854 GSPT2Q8IYD1 628 aaKnown RBP28.03■■■□□ 2.08
C9orf40-201ENST00000376854 GDAP1L1Q96MZ0 367 aa28.03■■■□□ 2.08
C9orf40-201ENST00000376854 TRERF1Q96PN7 1200 aa28.03■■■□□ 2.08
C9orf40-201ENST00000376854 TANGO6Q9C0B7 1094 aa28.03■■■□□ 2.08
C9orf40-201ENST00000376854 FAM204AQ9H8W3 233 aa28.03■■■□□ 2.08
C9orf40-201ENST00000376854 JMJD4Q9H9V9 463 aa28.03■■■□□ 2.08
C9orf40-201ENST00000376854 MYBL2P10244 700 aa28.03■■■□□ 2.08
C9orf40-201ENST00000376854 ECM1Q16610 540 aa28.03■■■□□ 2.08
C9orf40-201ENST00000376854 ADGRF4Q8IZF3 695 aa28.03■■■□□ 2.08
C9orf40-201ENST00000376854 ALS2CR12Q96Q35 445 aa28.03■■■□□ 2.08
C9orf40-201ENST00000376854 DDX25Q9UHL0 483 aaKnown RBP28.03■■■□□ 2.08
C9orf40-201ENST00000376854 IGKV6D-41A0A0C4DH26 115 aa28.02■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms