RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 EHMT1Q9H9B1 1298 aa25.31■■□□□ 1.64
SHMT1-203ENST00000354098 BRMS1Q9HCU9 246 aa25.31■■□□□ 1.64
SHMT1-203ENST00000354098 EIF3JO75822 258 aaKnown RBP25.3■■□□□ 1.64
SHMT1-203ENST00000354098 RGS20O76081 388 aa25.3■■□□□ 1.64
SHMT1-203ENST00000354098 CCL5P13501 91 aa25.3■■□□□ 1.64
SHMT1-203ENST00000354098 CNGA1P29973 690 aa25.3■■□□□ 1.64
SHMT1-203ENST00000354098 CRYGNQ8WXF5 182 aa25.3■■□□□ 1.64
SHMT1-203ENST00000354098 HMX1Q9NP08 348 aaPredicted RBP25.3■■□□□ 1.64
SHMT1-203ENST00000354098 VTA1Q9NP79 307 aa25.3■■□□□ 1.64
SHMT1-203ENST00000354098 TSHZ2Q9NRE2 1034 aa25.3■■□□□ 1.64
SHMT1-203ENST00000354098 FAM205CA6NFA0 338 aa25.29■■□□□ 1.64
SHMT1-203ENST00000354098 EDIL3O43854 480 aa25.29■■□□□ 1.64
SHMT1-203ENST00000354098 ARHGAP4P98171 946 aa25.29■■□□□ 1.64
SHMT1-203ENST00000354098 SAFBQ15424 915 aaKnown RBP eCLIP25.29■■□□□ 1.64
SHMT1-203ENST00000354098 CCDC144BQ3MJ40 725 aa25.29■■□□□ 1.64
SHMT1-203ENST00000354098 TMEM63BQ5T3F8 832 aa25.29■■□□□ 1.64
SHMT1-203ENST00000354098 NRBP1Q9UHY1 535 aa25.29■■□□□ 1.64
SHMT1-203ENST00000354098 SEPT14Q6ZU15 432 aa25.29■■□□□ 1.64
SHMT1-203ENST00000354098 PIK3AP1Q6ZUJ8 805 aa25.29■■□□□ 1.64
SHMT1-203ENST00000354098 KRT25Q7Z3Z0 450 aa25.29■■□□□ 1.64
SHMT1-203ENST00000354098 TBCKQ8TEA7 893 aa25.29■■□□□ 1.64
SHMT1-203ENST00000354098 CCDC194A0A1B0GVG4 234 aa25.28■■□□□ 1.64
SHMT1-203ENST00000354098 C11orf97A0A1B0GVM6 126 aaPredicted RBP25.28■■□□□ 1.64
SHMT1-203ENST00000354098 KIF28PB7ZC32 967 aa25.28■■□□□ 1.64
SHMT1-203ENST00000354098 H3BQV1 296 aa25.28■■□□□ 1.64
SHMT1-203ENST00000354098 ADCY6O43306 1168 aa25.28■■□□□ 1.64
SHMT1-203ENST00000354098 ADCYAP1R1P41586 468 aa25.28■■□□□ 1.64
SHMT1-203ENST00000354098 IFFO2Q5TF58 517 aa25.28■■□□□ 1.64
SHMT1-203ENST00000354098 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.28■■□□□ 1.64
SHMT1-203ENST00000354098 RNF208Q9H0X6 261 aa25.28■■□□□ 1.64
SHMT1-203ENST00000354098 BRCA2P51587 3418 aa25.28■■□□□ 1.64
SHMT1-203ENST00000354098 NONOQ15233 471 aaKnown RBP eCLIP25.27■■□□□ 1.64
SHMT1-203ENST00000354098 INF2Q27J81 1249 aa25.27■■□□□ 1.64
SHMT1-203ENST00000354098 ANO1Q5XXA6 986 aa25.27■■□□□ 1.64
SHMT1-203ENST00000354098 XRRA1Q6P2D8 792 aa25.27■■□□□ 1.64
SHMT1-203ENST00000354098 CYP2W1Q8TAV3 490 aa25.27■■□□□ 1.64
SHMT1-203ENST00000354098 SEPT4O43236 478 aa25.26■■□□□ 1.63
SHMT1-203ENST00000354098 ITGB5P18084 799 aa25.26■■□□□ 1.63
SHMT1-203ENST00000354098 SYT1P21579 422 aa25.26■■□□□ 1.63
SHMT1-203ENST00000354098 PTGS1P23219 599 aa25.26■■□□□ 1.63
SHMT1-203ENST00000354098 LENG1Q96BZ8 264 aaPredicted RBP25.26■■□□□ 1.63
SHMT1-203ENST00000354098 RBM47A0AV96 593 aaKnown RBP25.26■■□□□ 1.63
SHMT1-203ENST00000354098 CYP3A4P08684 503 aa25.26■■□□□ 1.63
SHMT1-203ENST00000354098 INPP4AQ96PE3 977 aaPredicted RBP25.26■■□□□ 1.63
SHMT1-203ENST00000354098 WDR11Q9BZH6 1224 aa25.26■■□□□ 1.63
SHMT1-203ENST00000354098 FOXP1Q9H334 677 aaPredicted RBP25.26■■□□□ 1.63
SHMT1-203ENST00000354098 PAK6Q9NQU5 681 aaPredicted RBP25.26■■□□□ 1.63
SHMT1-203ENST00000354098 FAM184BQ9ULE4 1060 aa25.26■■□□□ 1.63
SHMT1-203ENST00000354098 UBIAD1Q9Y5Z9 338 aa25.26■■□□□ 1.63
SHMT1-203ENST00000354098 FAM86B1E9PN63 330 aa25.25■■□□□ 1.63
SHMT1-203ENST00000354098 STAM2O75886 525 aa25.25■■□□□ 1.63
SHMT1-203ENST00000354098 ARIH2O95376 493 aa25.25■■□□□ 1.63
SHMT1-203ENST00000354098 FAM86B2P0C5J1 330 aa25.25■■□□□ 1.63
SHMT1-203ENST00000354098 AKR1A1P14550 325 aa25.25■■□□□ 1.63
SHMT1-203ENST00000354098 PDCP20941 246 aa25.25■■□□□ 1.63
SHMT1-203ENST00000354098 MCTP1Q6DN14 999 aa25.25■■□□□ 1.63
SHMT1-203ENST00000354098 TNS4Q8IZW8 715 aa25.25■■□□□ 1.63
SHMT1-203ENST00000354098 VPS37CA5D8V6 355 aaPredicted RBP25.24■■□□□ 1.63
SHMT1-203ENST00000354098 SMPD1P17405 629 aa25.24■■□□□ 1.63
SHMT1-203ENST00000354098 GNL2Q13823 731 aaKnown RBP25.24■■□□□ 1.63
SHMT1-203ENST00000354098 GJC2Q5T442 439 aaPredicted RBP25.24■■□□□ 1.63
SHMT1-203ENST00000354098 ABHD8Q96I13 439 aa25.24■■□□□ 1.63
SHMT1-203ENST00000354098 MXRA8Q9BRK3 442 aa25.24■■□□□ 1.63
SHMT1-203ENST00000354098 DDX20Q9UHI6 824 aaKnown RBP25.24■■□□□ 1.63
SHMT1-203ENST00000354098 RBM19Q9Y4C8 960 aaKnown RBP25.24■■□□□ 1.63
SHMT1-203ENST00000354098 MYH7BA7E2Y1 1941 aa25.24■■□□□ 1.63
SHMT1-203ENST00000354098 U2AF2P26368 475 aaKnown RBP eCLIP25.23■■□□□ 1.638e-8■■■■■ 27.5
SHMT1-203ENST00000354098 ZNF76P36508 570 aa25.23■■□□□ 1.63
SHMT1-203ENST00000354098 USP11P51784 963 aa25.23■■□□□ 1.63
SHMT1-203ENST00000354098 TNFAIP2Q03169 654 aa25.23■■□□□ 1.63
SHMT1-203ENST00000354098 SEMA3FQ13275 785 aa25.23■■□□□ 1.63
SHMT1-203ENST00000354098 CEP55Q53EZ4 464 aa25.23■■□□□ 1.63
SHMT1-203ENST00000354098 LHX8Q68G74 356 aa25.23■■□□□ 1.63
SHMT1-203ENST00000354098 IQSEC1Q6DN90 963 aa25.23■■□□□ 1.63
SHMT1-203ENST00000354098 SCFD2Q8WU76 684 aa25.23■■□□□ 1.63
SHMT1-203ENST00000354098 DEFB118Q96PH6 123 aa25.23■■□□□ 1.63
SHMT1-203ENST00000354098 ANP32AP39687 249 aaKnown RBP25.23■■□□□ 1.63
SHMT1-203ENST00000354098 LY6KQ17RY6 165 aa25.23■■□□□ 1.63
SHMT1-203ENST00000354098 CCDC62Q6P9F0 684 aa25.23■■□□□ 1.63
SHMT1-203ENST00000354098 NOSTRINQ8IVI9 506 aa25.23■■□□□ 1.63
SHMT1-203ENST00000354098 JADE2Q9NQC1 790 aa25.23■■□□□ 1.63
SHMT1-203ENST00000354098 MRVI1Q9Y6F6 885 aa25.23■■□□□ 1.63
SHMT1-203ENST00000354098 IGLV3-22A0A075B6J6 115 aa25.22■■□□□ 1.63
SHMT1-203ENST00000354098 TXNP10599 105 aaKnown RBP25.22■■□□□ 1.63
SHMT1-203ENST00000354098 SP2Q02086 613 aa25.22■■□□□ 1.63
SHMT1-203ENST00000354098 TTLL4Q14679 1199 aa25.22■■□□□ 1.63
SHMT1-203ENST00000354098 LETM2Q2VYF4 491 aa25.22■■□□□ 1.63
SHMT1-203ENST00000354098 GNPTABQ3T906 1256 aa25.22■■□□□ 1.63
SHMT1-203ENST00000354098 COPS5Q92905 334 aa25.22■■□□□ 1.63
SHMT1-203ENST00000354098 KIAA1217Q5T5P2 1943 aa25.21■■□□□ 1.63
SHMT1-203ENST00000354098 SPATA31C2B4DYI2 1134 aa25.21■■□□□ 1.63
SHMT1-203ENST00000354098 MEIS1O00470 390 aa25.21■■□□□ 1.63
SHMT1-203ENST00000354098 TDP2O95551 362 aa25.21■■□□□ 1.63
SHMT1-203ENST00000354098 CIITAP33076 1130 aa25.21■■□□□ 1.63
SHMT1-203ENST00000354098 DUSP28Q4G0W2 176 aa25.21■■□□□ 1.63
SHMT1-203ENST00000354098 NEK8Q86SG6 692 aa25.21■■□□□ 1.63
SHMT1-203ENST00000354098 NLRX1Q86UT6 975 aa25.21■■□□□ 1.63
SHMT1-203ENST00000354098 DDX41Q9UJV9 622 aaKnown RBP25.21■■□□□ 1.63
SHMT1-203ENST00000354098 GNEQ9Y223 722 aaKnown RBP25.21■■□□□ 1.63
SHMT1-203ENST00000354098 WNT7AO00755 349 aa25.2■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms