RNA–Protein interactions for RNA: ENST00000349124.2

PTP4A3-202, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 1 (best) BASIC

Gene PTP4A3, Length 2,710 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-202ENST00000349124 SLC16A2P36021 539 aa20.09■□□□□ 0.81
PTP4A3-202ENST00000349124 CACNB1Q02641 598 aaPredicted RBP20.09■□□□□ 0.81
PTP4A3-202ENST00000349124 CKAP4Q07065 602 aaKnown RBP20.09■□□□□ 0.81
PTP4A3-202ENST00000349124 FIGNQ5HY92 759 aa20.09■□□□□ 0.81
PTP4A3-202ENST00000349124 LRRC31Q6UY01 552 aa20.09■□□□□ 0.81
PTP4A3-202ENST00000349124 C10orf67Q8IYJ2 551 aa20.09■□□□□ 0.81
PTP4A3-202ENST00000349124 CRACR2AQ9BSW2 395 aa20.09■□□□□ 0.81
PTP4A3-202ENST00000349124 F8W031 263 aaPredicted RBP20.08■□□□□ 0.81
PTP4A3-202ENST00000349124 RFC4P35249 363 aa20.08■□□□□ 0.81
PTP4A3-202ENST00000349124 DNA2P51530 1060 aa20.08■□□□□ 0.81
PTP4A3-202ENST00000349124 RASSF7Q02833 373 aa20.08■□□□□ 0.81
PTP4A3-202ENST00000349124 RC3H1Q5TC82 1133 aaKnown RBP20.08■□□□□ 0.81
PTP4A3-202ENST00000349124 LRRC55Q6ZSA7 311 aa20.08■□□□□ 0.81
PTP4A3-202ENST00000349124 BAP1Q92560 729 aa20.08■□□□□ 0.81
PTP4A3-202ENST00000349124 RIOX1Q9H6W3 641 aa20.08■□□□□ 0.81
PTP4A3-202ENST00000349124 ANO9A1A5B4 782 aa20.08■□□□□ 0.8
PTP4A3-202ENST00000349124 PPP1R11O60927 126 aaPredicted RBP20.08■□□□□ 0.8
PTP4A3-202ENST00000349124 SSBP05455 408 aaKnown RBP eCLIP20.08■□□□□ 0.8
PTP4A3-202ENST00000349124 AKR1B1P15121 316 aa20.08■□□□□ 0.8
PTP4A3-202ENST00000349124 CDK17Q00537 523 aa20.08■□□□□ 0.8
PTP4A3-202ENST00000349124 KCNMA1Q12791 1236 aa20.08■□□□□ 0.8
PTP4A3-202ENST00000349124 MS4A14Q96JA4 679 aa20.08■□□□□ 0.8
PTP4A3-202ENST00000349124 MED4Q9NPJ6 270 aa20.08■□□□□ 0.8
PTP4A3-202ENST00000349124 JRKLQ9Y4A0 524 aa20.08■□□□□ 0.8
PTP4A3-202ENST00000349124 HNRNPH3P31942 346 aaKnown RBP20.07■□□□□ 0.8
PTP4A3-202ENST00000349124 ENOX2Q16206 610 aaKnown RBP20.07■□□□□ 0.8
PTP4A3-202ENST00000349124 RAD54LQ92698 747 aa20.07■□□□□ 0.8
PTP4A3-202ENST00000349124 MTMR8Q96EF0 704 aa20.07■□□□□ 0.8
PTP4A3-202ENST00000349124 ZNF287Q9HBT7 754 aa20.07■□□□□ 0.8
PTP4A3-202ENST00000349124 WNK3Q9BYP7 1800 aa20.07■□□□□ 0.8
PTP4A3-202ENST00000349124 TARSL2A2RTX5 802 aaKnown RBP20.07■□□□□ 0.8
PTP4A3-202ENST00000349124 MYO1CO00159 1063 aa20.07■□□□□ 0.8
PTP4A3-202ENST00000349124 USO1O60763 962 aaKnown RBP20.07■□□□□ 0.8
PTP4A3-202ENST00000349124 TACC1O75410 805 aa20.07■□□□□ 0.8
PTP4A3-202ENST00000349124 MAGEA1P43355 309 aa20.07■□□□□ 0.8
PTP4A3-202ENST00000349124 AARSP49588 968 aaKnown RBP eCLIP20.07■□□□□ 0.88e-7■■■□□ 16.6
PTP4A3-202ENST00000349124 MAN2A1Q16706 1144 aa20.07■□□□□ 0.8
PTP4A3-202ENST00000349124 SPATA4Q8NEY3 305 aa20.07■□□□□ 0.8
PTP4A3-202ENST00000349124 CASZ1Q86V15 1759 aa20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 NPHP3-ACAD11A0A0J9YXS1 232 aa20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 SLC1A4P43007 532 aa20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 ADCY7P51828 1080 aa20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 SEMA3FQ13275 785 aa20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 CNBD1Q8NA66 436 aa20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 TRIM58Q8NG06 486 aa20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 OSBPL9Q96SU4 736 aa20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 MTMR4Q9NYA4 1195 aa20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 DPP8Q6V1X1 898 aaPredicted RBP20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 NELFCDQ8IXH7 590 aa20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 GUF1Q8N442 669 aaKnown RBP20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 TRIM34Q9BYJ4 488 aa20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 VIPAS39Q9H9C1 493 aa20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 COL5A3P25940 1745 aaPredicted RBP20.06■□□□□ 0.8
PTP4A3-202ENST00000349124 PVALEFA0A1B0GWK0 134 aa20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 FXR2P51116 673 aaKnown RBP eCLIP20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 KCTD19Q17RG1 926 aaPredicted RBP20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 MAP9Q49MG5 647 aa20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 SND1Q7KZF4 910 aaKnown RBP eCLIP20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 HAS1Q92839 578 aa20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 C8orf37Q96NL8 207 aa20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 ACBD3Q9H3P7 528 aa20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 POLLQ9UGP5 575 aa20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 RSPH14Q9UHP6 348 aa20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 ARID5AQ03989 594 aa20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 KRT79Q5XKE5 535 aa20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 RPGRIP1Q96KN7 1286 aa20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 RABEP2Q9H5N1 569 aa20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 RRP15Q9Y3B9 282 aaKnown RBP20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 CCDC88AQ3V6T2 1871 aa20.05■□□□□ 0.8
PTP4A3-202ENST00000349124 TRAF5O00463 557 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 TLR2O60603 784 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 NAP1L1P55209 391 aaKnown RBP20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 FAM196AQ6ZSG2 479 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 CACNA2D4Q7Z3S7 1137 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 AFAP1L1Q8TED9 768 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 EP400Q96L91 3159 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 TMEM266Q2M3C6 531 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 COBLL1Q53SF7 1204 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 TRAPPC3LQ5T215 181 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 HGSNATQ68CP4 663 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 SRLQ86TD4 932 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 DNAJC19Q96DA6 116 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 MXD3Q9BW11 206 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 TLR10Q9BXR5 811 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 TSGA10Q9BZW7 698 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 EHD4Q9H223 541 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 JMJD4Q9H9V9 463 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 STK17AQ9UEE5 414 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 MYH10P35580 1976 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 E9PMD0 336 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 ASTE1Q2TB18 679 aaPredicted RBP20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 TDRD12Q587J7 1177 aaKnown RBP20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 PRR5LQ6MZQ0 368 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 ADGRF4Q8IZF3 695 aa20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 DDX4Q9NQI0 724 aaKnown RBP20.04■□□□□ 0.8
PTP4A3-202ENST00000349124 NOL4O94818 638 aa20.03■□□□□ 0.8
PTP4A3-202ENST00000349124 RNASE9P60153 205 aaKnown RBP20.03■□□□□ 0.8
PTP4A3-202ENST00000349124 EHHADHQ08426 723 aa20.03■□□□□ 0.8
PTP4A3-202ENST00000349124 PDXDC1Q6P996 788 aa20.03■□□□□ 0.8
PTP4A3-202ENST00000349124 DNAAF5Q86Y56 855 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms