RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TRADDQ15628 312 aa24.78■■□□□ 1.56
TRIM28-202ENST00000341753 GRIK5Q16478 980 aa24.78■■□□□ 1.56
TRIM28-202ENST00000341753 NDST4Q9H3R1 872 aa24.78■■□□□ 1.56
TRIM28-202ENST00000341753 YY1AP1Q9H869 796 aa24.78■■□□□ 1.56
TRIM28-202ENST00000341753 TECP42680 631 aa24.77■■□□□ 1.56
TRIM28-202ENST00000341753 GUCY2DQ02846 1103 aa24.77■■□□□ 1.56
TRIM28-202ENST00000341753 VWA3BQ502W6 1294 aa24.77■■□□□ 1.56
TRIM28-202ENST00000341753 ZNF572Q7Z3I7 529 aaPredicted RBP24.77■■□□□ 1.56
TRIM28-202ENST00000341753 EPB41L5Q9HCM4 733 aa24.77■■□□□ 1.56
TRIM28-202ENST00000341753 M0R2N6 131 aa24.77■■□□□ 1.56
TRIM28-202ENST00000341753 ORC4O43929 436 aa24.77■■□□□ 1.56
TRIM28-202ENST00000341753 GOLGA8HP0CJ92 632 aa24.77■■□□□ 1.56
TRIM28-202ENST00000341753 ALS2CLQ60I27 953 aa24.77■■□□□ 1.56
TRIM28-202ENST00000341753 PNMA1Q8ND90 353 aa24.77■■□□□ 1.56
TRIM28-202ENST00000341753 CCDC47Q96A33 483 aaKnown RBP24.77■■□□□ 1.56
TRIM28-202ENST00000341753 TCP11L1Q9NUJ3 509 aa24.77■■□□□ 1.56
TRIM28-202ENST00000341753 CCNT1O60563 726 aaKnown RBP24.77■■□□□ 1.56
TRIM28-202ENST00000341753 TM4SF1P30408 202 aa24.77■■□□□ 1.56
TRIM28-202ENST00000341753 TFAP4Q01664 338 aa24.77■■□□□ 1.56
TRIM28-202ENST00000341753 PACSIN2Q9UNF0 486 aaPredicted RBP24.77■■□□□ 1.56
TRIM28-202ENST00000341753 ZNF233A6NK53 670 aa24.76■■□□□ 1.55
TRIM28-202ENST00000341753 FIGNQ5HY92 759 aa24.76■■□□□ 1.55
TRIM28-202ENST00000341753 KLHDC7AQ5VTJ3 777 aa24.76■■□□□ 1.55
TRIM28-202ENST00000341753 DYMQ7RTS9 669 aa24.76■■□□□ 1.55
TRIM28-202ENST00000341753 RTCBQ9Y3I0 505 aaKnown RBP24.76■■□□□ 1.55
TRIM28-202ENST00000341753 HEXIM1O94992 359 aaKnown RBP24.76■■□□□ 1.55
TRIM28-202ENST00000341753 FTCDO95954 541 aa24.76■■□□□ 1.55
TRIM28-202ENST00000341753 MYL1P05976 194 aa24.76■■□□□ 1.55
TRIM28-202ENST00000341753 EPB41P11171 864 aaKnown RBP24.76■■□□□ 1.55
TRIM28-202ENST00000341753 SKOR1P84550 965 aa24.76■■□□□ 1.55
TRIM28-202ENST00000341753 NFIXQ14938 502 aa24.76■■□□□ 1.55
TRIM28-202ENST00000341753 TDRD12Q587J7 1177 aaKnown RBP24.76■■□□□ 1.55
TRIM28-202ENST00000341753 CFAP58Q5T655 872 aa24.76■■□□□ 1.55
TRIM28-202ENST00000341753 TPTE2Q6XPS3 522 aa24.76■■□□□ 1.55
TRIM28-202ENST00000341753 DYNLL2Q96FJ2 89 aa24.76■■□□□ 1.55
TRIM28-202ENST00000341753 NLRC4Q9NPP4 1024 aa24.76■■□□□ 1.55
TRIM28-202ENST00000341753 IL17RBQ9NRM6 502 aa24.76■■□□□ 1.55
TRIM28-202ENST00000341753 CYTH3O43739 400 aa24.75■■□□□ 1.55
TRIM28-202ENST00000341753 PRLRP16471 622 aa24.75■■□□□ 1.55
TRIM28-202ENST00000341753 ITIH3Q06033 890 aa24.75■■□□□ 1.55
TRIM28-202ENST00000341753 DIXDC1Q155Q3 683 aa24.75■■□□□ 1.55
TRIM28-202ENST00000341753 CAVIN3Q969G5 261 aa24.75■■□□□ 1.55
TRIM28-202ENST00000341753 MCM9Q9NXL9 1143 aa24.75■■□□□ 1.55
TRIM28-202ENST00000341753 ANKIB1Q9P2G1 1089 aa24.75■■□□□ 1.55
TRIM28-202ENST00000341753 USP17L3A6NCW0 530 aa24.75■■□□□ 1.55
TRIM28-202ENST00000341753 USP17L4A6NCW7 530 aa24.75■■□□□ 1.55
TRIM28-202ENST00000341753 SEC24CP53992 1094 aa24.75■■□□□ 1.55
TRIM28-202ENST00000341753 USP17L1Q7RTZ2 530 aa24.75■■□□□ 1.55
TRIM28-202ENST00000341753 NYXQ9GZU5 481 aa24.75■■□□□ 1.55
TRIM28-202ENST00000341753 SCN7AQ01118 1682 aa24.74■■□□□ 1.55
TRIM28-202ENST00000341753 H0YHG0 523 aa24.74■■□□□ 1.55
TRIM28-202ENST00000341753 HNRNPH3P31942 346 aaKnown RBP24.74■■□□□ 1.55
TRIM28-202ENST00000341753 VPS72Q15906 364 aa24.74■■□□□ 1.55
TRIM28-202ENST00000341753 ENOX2Q16206 610 aaKnown RBP24.74■■□□□ 1.55
TRIM28-202ENST00000341753 PCP11498 1178 aaKnown RBP24.74■■□□□ 1.55
TRIM28-202ENST00000341753 POTEDQ86YR6 584 aa24.74■■□□□ 1.55
TRIM28-202ENST00000341753 OTUD6BQ8N6M0 293 aa24.74■■□□□ 1.55
TRIM28-202ENST00000341753 NCAPGQ9BPX3 1015 aa24.74■■□□□ 1.55
TRIM28-202ENST00000341753 CRNKL1Q9BZJ0 848 aaKnown RBP24.74■■□□□ 1.55
TRIM28-202ENST00000341753 TANGO6Q9C0B7 1094 aa24.74■■□□□ 1.55
TRIM28-202ENST00000341753 LSP1P33241 339 aa24.73■■□□□ 1.55
TRIM28-202ENST00000341753 DZIP1Q86YF9 867 aaKnown RBP24.73■■□□□ 1.55
TRIM28-202ENST00000341753 GLIS3Q8NEA6 775 aa24.73■■□□□ 1.55
TRIM28-202ENST00000341753 KIAA0754O94854 1291 aa24.73■■□□□ 1.55
TRIM28-202ENST00000341753 OR52Z1P0C646 297 aa24.73■■□□□ 1.55
TRIM28-202ENST00000341753 LRRC41Q15345 812 aa24.73■■□□□ 1.55
TRIM28-202ENST00000341753 CACNA2D4Q7Z3S7 1137 aa24.73■■□□□ 1.55
TRIM28-202ENST00000341753 NOX5Q96PH1 765 aa24.73■■□□□ 1.55
TRIM28-202ENST00000341753 KRT12Q99456 494 aa24.73■■□□□ 1.55
TRIM28-202ENST00000341753 C7orf25Q9BPX7 421 aa24.73■■□□□ 1.55
TRIM28-202ENST00000341753 MAD2L2Q9UI95 211 aa24.73■■□□□ 1.55
TRIM28-202ENST00000341753 STXBP3O00186 592 aa24.72■■□□□ 1.55
TRIM28-202ENST00000341753 IFT20Q8IY31 132 aa24.72■■□□□ 1.55
TRIM28-202ENST00000341753 BAP1Q92560 729 aa24.72■■□□□ 1.55
TRIM28-202ENST00000341753 CENPHQ9H3R5 247 aa24.72■■□□□ 1.55
TRIM28-202ENST00000341753 GEMIN8Q9NWZ8 242 aaKnown RBP24.72■■□□□ 1.55
TRIM28-202ENST00000341753 CFAP221Q4G0U5 840 aa24.72■■□□□ 1.55
TRIM28-202ENST00000341753 PIK3R5Q8WYR1 880 aa24.72■■□□□ 1.55
TRIM28-202ENST00000341753 SH3GLB2Q9NR46 395 aa24.72■■□□□ 1.55
TRIM28-202ENST00000341753 PALMO75781 387 aa24.71■■□□□ 1.55
TRIM28-202ENST00000341753 RNF187Q5TA31 235 aaPredicted RBP24.71■■□□□ 1.55
TRIM28-202ENST00000341753 CNNM4Q6P4Q7 775 aa24.71■■□□□ 1.55
TRIM28-202ENST00000341753 IQCKQ8N0W5 287 aa24.71■■□□□ 1.55
TRIM28-202ENST00000341753 MMTAG2Q9BU76 263 aaKnown RBP24.71■■□□□ 1.55
TRIM28-202ENST00000341753 TOM1O60784 492 aa24.71■■□□□ 1.55
TRIM28-202ENST00000341753 LCA5LO95447 670 aa24.71■■□□□ 1.55
TRIM28-202ENST00000341753 ARID5AQ03989 594 aa24.71■■□□□ 1.55
TRIM28-202ENST00000341753 NAA35Q5VZE5 725 aa24.71■■□□□ 1.55
TRIM28-202ENST00000341753 PROCA1Q8NCQ7 364 aaPredicted RBP24.71■■□□□ 1.55
TRIM28-202ENST00000341753 SLC44A5Q8NCS7 719 aa24.71■■□□□ 1.55
TRIM28-202ENST00000341753 CASKIN2Q8WXE0 1202 aa24.71■■□□□ 1.55
TRIM28-202ENST00000341753 PTPROQ16827 1216 aa24.7■■□□□ 1.55
TRIM28-202ENST00000341753 CENPPQ6IPU0 288 aa24.7■■□□□ 1.55
TRIM28-202ENST00000341753 SH3RF3Q8TEJ3 882 aaPredicted RBP24.7■■□□□ 1.55
TRIM28-202ENST00000341753 MYCBPQ99417 103 aaPredicted RBP24.7■■□□□ 1.55
TRIM28-202ENST00000341753 ANKRD2Q9GZV1 360 aa24.7■■□□□ 1.55
TRIM28-202ENST00000341753 KANSL2Q9H9L4 492 aa24.7■■□□□ 1.55
TRIM28-202ENST00000341753 UBAP1LF5GYI3 381 aa24.7■■□□□ 1.54
TRIM28-202ENST00000341753 HPDP32754 393 aaPredicted RBP24.7■■□□□ 1.54
TRIM28-202ENST00000341753 MAN2A1Q16706 1144 aa24.7■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms