RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 NDUFA8P51970 172 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 FAM160A1Q05DH4 1040 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 RASSF8Q8NHQ8 419 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 CYP39A1Q9NYL5 469 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 EDIL3O43854 480 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 CCNA1P78396 465 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 TMEM266Q2M3C6 531 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 CYP4F22Q6NT55 531 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 COPB2P35606 906 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 GCLCP48506 637 aaPredicted RBP11.33□□□□□ -0.6
HMGB3-201ENST00000325307 TAF1CQ15572 869 aaPredicted RBP11.33□□□□□ -0.6
HMGB3-201ENST00000325307 ZRSR1Q15695 479 aaKnown RBP11.33□□□□□ -0.6
HMGB3-201ENST00000325307 CAMK4Q16566 473 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 RESP18Q5W5W9 173 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 CNPY4Q8N129 248 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 PDILTQ8N807 584 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 ZNF830Q96NB3 372 aaPredicted RBP11.33□□□□□ -0.6
HMGB3-201ENST00000325307 FAM86B1E9PN63 330 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 IGF2BP3O00425 579 aaKnown RBP eCLIP11.33□□□□□ -0.6
HMGB3-201ENST00000325307 FAM86B2P0C5J1 330 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 PRPHP41219 470 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 TECP42680 631 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 SYKP43405 635 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 ZNF579Q8NAF0 562 aaKnown RBP11.33□□□□□ -0.6
HMGB3-201ENST00000325307 CYP2W1Q8TAV3 490 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 SYMPKQ92797 1274 aaKnown RBP11.33□□□□□ -0.6
HMGB3-201ENST00000325307 GJA10Q969M2 543 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 EPSTI1Q96J88 318 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 PPP1R9BQ96SB3 815 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 PFASO15067 1338 aa11.33□□□□□ -0.6
HMGB3-201ENST00000325307 MYH7BA7E2Y1 1941 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.32□□□□□ -0.6
HMGB3-201ENST00000325307 ECM2O94769 699 aaPredicted RBP11.32□□□□□ -0.6
HMGB3-201ENST00000325307 CYP3A4P08684 503 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 TXLNAP40222 546 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 GHRHRQ02643 423 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 SREBF2Q12772 1141 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 KCTD2Q14681 263 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 IL17AQ16552 155 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 CCDC183Q5T5S1 534 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 MOXD1Q6UVY6 613 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 PLA2G4DQ86XP0 818 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 IL31RAQ8NI17 732 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 NSUN6Q8TEA1 469 aaKnown RBP11.32□□□□□ -0.6
HMGB3-201ENST00000325307 CRYGNQ8WXF5 182 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 NUP62CLQ9H1M0 184 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 PXMP2Q9NR77 195 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 DDX19AQ9NUU7 478 aaKnown RBP11.32□□□□□ -0.6
HMGB3-201ENST00000325307 KCNH3Q9ULD8 1083 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 POTEB2H3BUK9 544 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 CDC25AP30304 524 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 LONP1P36776 959 aaKnown RBP11.32□□□□□ -0.6
HMGB3-201ENST00000325307 INHBEP58166 350 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 USP49Q70CQ1 688 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 EFCC1Q9HA90 598 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 MORC2Q9Y6X9 1032 aaPredicted RBP11.32□□□□□ -0.6
HMGB3-201ENST00000325307 CYP3A7-CYP3A51PA0A087WV96 503 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 TESPA1A2RU30 521 aaPredicted RBP11.32□□□□□ -0.6
HMGB3-201ENST00000325307 FAM155AB1AL88 458 aaPredicted RBP11.32□□□□□ -0.6
HMGB3-201ENST00000325307 CYP3A7P24462 503 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 CEP55Q53EZ4 464 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 MMP19Q99542 508 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 SDF4Q9BRK5 362 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 FUCA2Q9BTY2 467 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 RAB34Q9BZG1 259 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 PORCNQ9H237 461 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 TTC12Q9H892 705 aaPredicted RBP11.32□□□□□ -0.6
HMGB3-201ENST00000325307 CPA4Q9UI42 421 aa11.32□□□□□ -0.6
HMGB3-201ENST00000325307 ESPNB1AK53 854 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 ZNF202O95125 648 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 CIITAP33076 1130 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 UBA7P41226 1012 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 CNTN2Q02246 1040 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 PGM5Q15124 567 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 IFNL1Q8IU54 200 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 MTMR9Q96QG7 549 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 PDCD2LQ9BRP1 358 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 TNMDQ9H2S6 317 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 R3HDMLQ9H3Y0 253 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 MROH8Q9H579 483 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 PCDHA12Q9UN75 941 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 FCER1AP12319 257 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 CCND2P30279 289 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 DEFB115Q30KQ5 88 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 Q4G0T1 1027 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 SLFN12Q8IYM2 578 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 FMR1NBQ8N0W7 255 aaPredicted RBP11.31□□□□□ -0.6
HMGB3-201ENST00000325307 HHIPL1Q96JK4 782 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 PKD2L1Q9P0L9 805 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 IVNS1ABPQ9Y6Y0 642 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 RPTORQ8N122 1335 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 PP2D1A8MPX8 630 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 POLR2DO15514 142 aaKnown RBP11.31□□□□□ -0.6
HMGB3-201ENST00000325307 PGK2P07205 417 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 SNW1Q13573 536 aaKnown RBP11.31□□□□□ -0.6
HMGB3-201ENST00000325307 PCNX4Q63HM2 1172 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 HAS1Q92839 578 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 ZIC5Q96T25 663 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 TMEM51Q9NW97 253 aa11.31□□□□□ -0.6
HMGB3-201ENST00000325307 LRWD1Q9UFC0 647 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms