RNA–Protein interactions for RNA: ENST00000319533.9

RPP40-201, Transcript of ribonuclease P/MRP subunit p40, humanhuman

TSL 1 (best) BASIC

Gene RPP40, Length 1,088 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPP40-201ENST00000319533 TET1Q8NFU7 2136 aa16.62■□□□□ 0.25
RPP40-201ENST00000319533 CAGE1Q8TC20 777 aa16.62■□□□□ 0.25
RPP40-201ENST00000319533 AFAP1L1Q8TED9 768 aa16.62■□□□□ 0.25
RPP40-201ENST00000319533 PPP1R13LQ8WUF5 828 aa16.62■□□□□ 0.25
RPP40-201ENST00000319533 EMID1Q96A84 441 aaPredicted RBP16.62■□□□□ 0.25
RPP40-201ENST00000319533 DSCC1Q9BVC3 393 aa16.62■□□□□ 0.25
RPP40-201ENST00000319533 TSPYL2Q9H2G4 693 aaPredicted RBP16.62■□□□□ 0.25
RPP40-201ENST00000319533 ZSWIM5Q9P217 1185 aa16.62■□□□□ 0.25
RPP40-201ENST00000319533 MTCH2Q9Y6C9 303 aa16.62■□□□□ 0.25
RPP40-201ENST00000319533 KIAA1217Q5T5P2 1943 aa16.61■□□□□ 0.25
RPP40-201ENST00000319533 NUCB1Q02818 461 aa16.61■□□□□ 0.25
RPP40-201ENST00000319533 GPNMBQ14956 572 aa16.61■□□□□ 0.25
RPP40-201ENST00000319533 LY6KQ17RY6 165 aa16.61■□□□□ 0.25
RPP40-201ENST00000319533 QRICH1Q2TAL8 776 aa16.61■□□□□ 0.25
RPP40-201ENST00000319533 GDF6Q6KF10 455 aaPredicted RBP16.61■□□□□ 0.25
RPP40-201ENST00000319533 RMDN3Q96TC7 470 aa16.61■□□□□ 0.25
RPP40-201ENST00000319533 JMJD4Q9H9V9 463 aa16.61■□□□□ 0.25
RPP40-201ENST00000319533 DDX41Q9UJV9 622 aaKnown RBP16.61■□□□□ 0.25
RPP40-201ENST00000319533 MRPL11Q9Y3B7 192 aaKnown RBP16.61■□□□□ 0.25
RPP40-201ENST00000319533 PRRC2BQ5JSZ5 2229 aaKnown RBP16.6■□□□□ 0.25
RPP40-201ENST00000319533 B4E1Z4 1266 aa16.6■□□□□ 0.25
RPP40-201ENST00000319533 HIP1O00291 1037 aa16.6■□□□□ 0.25
RPP40-201ENST00000319533 EIF3JO75822 258 aaKnown RBP16.6■□□□□ 0.25
RPP40-201ENST00000319533 PARNO95453 639 aaKnown RBP16.6■□□□□ 0.25
RPP40-201ENST00000319533 BMP1P13497 986 aa16.6■□□□□ 0.25
RPP40-201ENST00000319533 CASTP20810 708 aaKnown RBP16.6■□□□□ 0.25
RPP40-201ENST00000319533 TAP1Q03518 808 aa16.6■□□□□ 0.25
RPP40-201ENST00000319533 CWC27Q6UX04 472 aaKnown RBP16.6■□□□□ 0.25
RPP40-201ENST00000319533 SEPT14Q6ZU15 432 aa16.6■□□□□ 0.25
RPP40-201ENST00000319533 FBXO11Q86XK2 927 aa16.6■□□□□ 0.25
RPP40-201ENST00000319533 CCDC155Q8N6L0 562 aa16.6■□□□□ 0.25
RPP40-201ENST00000319533 DHX38Q92620 1227 aaKnown RBP16.6■□□□□ 0.25
RPP40-201ENST00000319533 UHRF1Q96T88 793 aaPredicted RBP16.6■□□□□ 0.25
RPP40-201ENST00000319533 FTOQ9C0B1 505 aaKnown RBP eCLIP16.6■□□□□ 0.25
RPP40-201ENST00000319533 NOD1Q9Y239 953 aa16.6■□□□□ 0.25
RPP40-201ENST00000319533 TRIP12Q14669 1992 aaPredicted RBP16.59■□□□□ 0.25
RPP40-201ENST00000319533 EPOPA6NHQ4 379 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 KIF28PB7ZC32 967 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 RFXAPO00287 272 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 OPLAHO14841 1288 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 ARHGEF15O94989 841 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 CXCL10P02778 98 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 PARP1P09874 1014 aaKnown RBP16.59■□□□□ 0.25
RPP40-201ENST00000319533 HOXD8P13378 290 aaPredicted RBP16.59■□□□□ 0.25
RPP40-201ENST00000319533 SELPP16109 830 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 HSD17B4P51659 736 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 DGKDQ16760 1214 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 B4GALNT3Q6L9W6 998 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 MTMR8Q96EF0 704 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 KRT23Q9C075 422 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 PXMP2Q9NR77 195 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 DIAPH3Q9NSV4 1193 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 MAP3K20Q9NYL2 800 aaKnown RBP16.59■□□□□ 0.25
RPP40-201ENST00000319533 GTF2IRD1Q9UHL9 959 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 CTNNA3Q9UI47 895 aa16.59■□□□□ 0.25
RPP40-201ENST00000319533 HAS3O00219 553 aa16.58■□□□□ 0.24
RPP40-201ENST00000319533 GTPBP6O43824 516 aaPredicted RBP16.58■□□□□ 0.24
RPP40-201ENST00000319533 IGHDP01880 384 aa16.58■□□□□ 0.24
RPP40-201ENST00000319533 NR3C2P08235 984 aa16.58■□□□□ 0.24
RPP40-201ENST00000319533 IMMTQ16891 758 aaKnown RBP16.58■□□□□ 0.24
RPP40-201ENST00000319533 ARHGEF16Q5VV41 709 aa16.58■□□□□ 0.24
RPP40-201ENST00000319533 LRRC8DQ7L1W4 858 aa16.58■□□□□ 0.24
RPP40-201ENST00000319533 PPTC7Q8NI37 304 aa16.58■□□□□ 0.24
RPP40-201ENST00000319533 CNNM2Q9H8M5 875 aa16.58■□□□□ 0.24
RPP40-201ENST00000319533 PTPRSQ13332 1948 aa16.58■□□□□ 0.24
RPP40-201ENST00000319533 F2P00734 622 aa16.57■□□□□ 0.24
RPP40-201ENST00000319533 EIF2AK2P19525 551 aaKnown RBP16.57■□□□□ 0.24
RPP40-201ENST00000319533 WDR5P61964 334 aaKnown RBP16.57■□□□□ 0.24
RPP40-201ENST00000319533 LAMC2Q13753 1193 aa16.57■□□□□ 0.24
RPP40-201ENST00000319533 SEC23AQ15436 765 aa16.57■□□□□ 0.24
RPP40-201ENST00000319533 AAK1Q2M2I8 961 aa16.57■□□□□ 0.24
RPP40-201ENST00000319533 MICALL1Q8N3F8 863 aa16.57■□□□□ 0.24
RPP40-201ENST00000319533 SAMD3Q8N6K7 520 aa16.57■□□□□ 0.24
RPP40-201ENST00000319533 KATNAL1Q9BW62 490 aa16.57■□□□□ 0.24
RPP40-201ENST00000319533 AMNQ9BXJ7 453 aa16.57■□□□□ 0.24
RPP40-201ENST00000319533 VAT1LQ9HCJ6 419 aa16.57■□□□□ 0.24
RPP40-201ENST00000319533 HDAC6Q9UBN7 1215 aa16.57■□□□□ 0.24
RPP40-201ENST00000319533 COG5Q9UP83 839 aa16.57■□□□□ 0.24
RPP40-201ENST00000319533 MYH6P13533 1939 aa16.57■□□□□ 0.24
RPP40-201ENST00000319533 NBNO60934 754 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 RGS20O76081 388 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 CKBP12277 381 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 COL9A1P20849 921 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 KCNJ6P48051 423 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 PSEN2P49810 448 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 TFF2Q03403 129 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 PTK7Q13308 1070 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 TRIM71Q2Q1W2 868 aaKnown RBP16.56■□□□□ 0.24
RPP40-201ENST00000319533 CNKSR3Q6P9H4 555 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 TRAF7Q6Q0C0 670 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 STOX1Q6ZVD7 989 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 CHST3Q7LGC8 479 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 STAG2Q8N3U4 1231 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 IL27Q8NEV9 243 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 ARNTL2Q8WYA1 636 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 PDCD2LQ9BRP1 358 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 CERS4Q9HA82 394 aa16.56■□□□□ 0.24
RPP40-201ENST00000319533 PALM3A6NDB9 673 aaPredicted RBP16.55■□□□□ 0.24
RPP40-201ENST00000319533 KLRF2D3W0D1 207 aa16.55■□□□□ 0.24
RPP40-201ENST00000319533 TLL1O43897 1013 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms