RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 RCSD1Q6JBY9 416 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 CCNI2Q6ZMN8 369 aaPredicted RBP11.64□□□□□ -0.55
COL3A1-202ENST00000317840 AMIGO3Q86WK7 504 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 FNBP4Q8N3X1 1017 aaPredicted RBP11.64□□□□□ -0.55
COL3A1-202ENST00000317840 LARP4BQ92615 738 aaKnown RBP11.64□□□□□ -0.55
COL3A1-202ENST00000317840 SPAG5Q96R06 1193 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 CAPS2Q9BXY5 557 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 CUEDC2Q9H467 287 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 CD209Q9NNX6 404 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 KBTBD4Q9NVX7 518 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 STK32BQ9NY57 414 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 BCCIPQ9P287 314 aaKnown RBP eCLIP11.64□□□□□ -0.55
COL3A1-202ENST00000317840 NID2Q14112 1375 aa11.64□□□□□ -0.55
COL3A1-202ENST00000317840 ZNF142P52746 1687 aaPredicted RBP11.64□□□□□ -0.55
COL3A1-202ENST00000317840 ANO9A1A5B4 782 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 PPFIA4O75335 1185 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 GFPT1Q06210 699 aaPredicted RBP11.63□□□□□ -0.55
COL3A1-202ENST00000317840 VWA3BQ502W6 1294 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 POTEDQ86YR6 584 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 SPATA4Q8NEY3 305 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 COA7Q96BR5 231 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 TMEM260Q9NX78 707 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 DMGDHQ9UI17 866 aaKnown RBP11.63□□□□□ -0.55
COL3A1-202ENST00000317840 LEMD3Q9Y2U8 911 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 ESYT3A0FGR9 886 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 TULP2O00295 520 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 MYBL2P10244 700 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 LIG3P49916 1009 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 PPFIA1Q13136 1202 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 GRM4Q14833 912 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 C12orf60Q5U649 245 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 PAPD7Q5XG87 772 aaKnown RBP11.63□□□□□ -0.55
COL3A1-202ENST00000317840 LRRC31Q6UY01 552 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 KLHL7Q8IXQ5 586 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 DUSP9Q99956 384 aaKnown RBP11.63□□□□□ -0.55
COL3A1-202ENST00000317840 IL17RBQ9NRM6 502 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 SNX12Q9UMY4 172 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 CHRNA5P30532 468 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 POLR2FP61218 127 aaKnown RBP11.63□□□□□ -0.55
COL3A1-202ENST00000317840 CACNB1Q02641 598 aaPredicted RBP11.63□□□□□ -0.55
COL3A1-202ENST00000317840 MAN2A1Q16706 1144 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 CFAP221Q4G0U5 840 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 TMC4Q7Z404 712 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 ZNF384Q8TF68 577 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 HDAC7Q8WUI4 952 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 SAMM50Q9Y512 469 aa11.63□□□□□ -0.55
COL3A1-202ENST00000317840 FTCDO95954 541 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 GUCY2DQ02846 1103 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 FBXO33Q7Z6M2 555 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 CCDC155Q8N6L0 562 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 ZNF507Q8TCN5 953 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 PPM1EQ8WY54 764 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 OSBPL9Q96SU4 736 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 EHHADHQ08426 723 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 HERC4Q5GLZ8 1057 aaPredicted RBP11.62□□□□□ -0.55
COL3A1-202ENST00000317840 RNF187Q5TA31 235 aaPredicted RBP11.62□□□□□ -0.55
COL3A1-202ENST00000317840 VIPAS39Q9H9C1 493 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 MAGEF1Q9HAY2 307 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 AKAP11Q9UKA4 1901 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 MYH2Q9UKX2 1941 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 TARSL2A2RTX5 802 aaKnown RBP11.62□□□□□ -0.55
COL3A1-202ENST00000317840 STXBP3O00186 592 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 CYTH3O43739 400 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 HPDP32754 393 aaPredicted RBP11.62□□□□□ -0.55
COL3A1-202ENST00000317840 LZTS2Q9BRK4 669 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 MAD2L2Q9UI95 211 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.62□□□□□ -0.55
COL3A1-202ENST00000317840 SPATA31A6Q5VVP1 1343 aa11.62□□□□□ -0.55
COL3A1-202ENST00000317840 KLRC4O43908 158 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 BBOX1O75936 387 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 SFMBT2Q5VUG0 894 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 IFT20Q8IY31 132 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 MYOCDQ8IZQ8 938 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 MS4A14Q96JA4 679 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 LSM14BQ9BX40 385 aaKnown RBP11.61□□□□□ -0.55
COL3A1-202ENST00000317840 EPB41L5Q9HCM4 733 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 MYO5AQ9Y4I1 1855 aaKnown RBP11.61□□□□□ -0.55
COL3A1-202ENST00000317840 PPIP5K2O43314 1243 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 GYS1P13807 737 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 ADCY7P51828 1080 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 GTF2A1P52655 376 aaPredicted RBP11.61□□□□□ -0.55
COL3A1-202ENST00000317840 KIAA0753Q2KHM9 967 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 RC3H1Q5TC82 1133 aaKnown RBP11.61□□□□□ -0.55
COL3A1-202ENST00000317840 CLEC10AQ8IUN9 316 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 C4orf32Q8N8J7 132 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 STIM2Q9P246 746 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 MYH8P13535 1937 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 TJP1Q07157 1748 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 SYF2O95926 243 aaKnown RBP11.61□□□□□ -0.55
COL3A1-202ENST00000317840 PLCG2P16885 1265 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 KLHL30Q0D2K2 578 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 ARHGAP20Q9P2F6 1191 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 NFU1Q9UMS0 254 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 PACSIN2Q9UNF0 486 aaPredicted RBP11.61□□□□□ -0.55
COL3A1-202ENST00000317840 C4AP0C0L4 1744 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 C4BP0C0L5 1744 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 HEXIM1O94992 359 aaKnown RBP11.61□□□□□ -0.55
COL3A1-202ENST00000317840 TDP2O95551 362 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 FECHP22830 423 aa11.61□□□□□ -0.55
COL3A1-202ENST00000317840 SLC1A4P43007 532 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms