RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CNNM1Q9NRU3 951 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 C6orf203Q9P0P8 240 aaPredicted RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 MTRF1LQ9UGC7 380 aaKnown RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 ARIH1Q9Y4X5 557 aaPredicted RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 C21orf2O43822 256 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 MARCKSP29966 332 aaPredicted RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 ADD2P35612 726 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 TBC1D8BQ0IIM8 1120 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 SLC9C2Q5TAH2 1124 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 PPP1R2P3Q6NXS1 205 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 SHC4Q6S5L8 630 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 STXBP4Q6ZWJ1 553 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 PIP4K2CQ8TBX8 421 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 DDX54Q8TDD1 881 aaKnown RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 SH3GL3Q99963 347 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 PPCSQ9HAB8 311 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 CTTNBP2NLQ9P2B4 639 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 SOS2Q07890 1332 aaPredicted RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 ACTN4O43707 911 aaKnown RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 EVI5O60447 810 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 TCIRG1Q13488 830 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 RASA3Q14644 834 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 CRYMQ14894 314 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 PRPF38AQ8NAV1 312 aaKnown RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 GDAP1L1Q96MZ0 367 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 MAP2P11137 1827 aaKnown RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 ATP5HO75947 161 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 CDR2Q01850 454 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 RNASELQ05823 741 aaKnown RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 CHRNA2Q15822 529 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 HPCAL4Q9UM19 191 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 POLR2DO15514 142 aaKnown RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 KDM1AO60341 852 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 KRT75O95678 551 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 PHKG2P15735 406 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 NEK2P51955 445 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 RNASE9P60153 205 aaKnown RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 GNGT1P63211 74 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 PNOCQ13519 176 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 CUL4BQ13620 913 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 TTC19Q6DKK2 380 aaPredicted RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 DDX42Q86XP3 938 aaKnown RBP eCLIP6.99□□□□□ -1.29
VPS35-201ENST00000299138 XAGE2Q96GT9 111 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 BRIP1Q9BX63 1249 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 YIPF3Q9GZM5 350 aa6.99□□□□□ -1.29
VPS35-201ENST00000299138 DDX28Q9NUL7 540 aaKnown RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 NOC2LQ9Y3T9 749 aaKnown RBP6.99□□□□□ -1.29
VPS35-201ENST00000299138 ATP1A3P13637 1013 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 MAGEA1P43355 309 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 WDR24Q96S15 920 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 SH3GL2Q99962 352 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 INTUQ9ULD6 942 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 MAN1A1P33908 653 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 MCM7P33993 719 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 IGHMBP2P38935 993 aaKnown RBP6.98□□□□□ -1.29
VPS35-201ENST00000299138 IRX4P78413 519 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 MRPS15P82914 257 aaKnown RBP6.98□□□□□ -1.29
VPS35-201ENST00000299138 CCDC15Q0P6D6 951 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 SND1Q7KZF4 910 aaKnown RBP eCLIP6.98□□□□□ -1.29
VPS35-201ENST00000299138 CACYBPQ9HB71 228 aaKnown RBP6.98□□□□□ -1.29
VPS35-201ENST00000299138 HOMER3Q9NSC5 361 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 PPP1R37O75864 691 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 DAB2P98082 770 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 ATP2C1P98194 919 aaPredicted RBP6.98□□□□□ -1.29
VPS35-201ENST00000299138 CETN1Q12798 172 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 KIF22Q14807 665 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 DTHD1Q6ZMT9 781 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 TAOK1Q7L7X3 1001 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 TBC1D5Q92609 795 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 CTNNAL1Q9UBT7 734 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.98□□□□□ -1.29
VPS35-201ENST00000299138 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.98□□□□□ -1.29
VPS35-201ENST00000299138 FAM107AO95990 144 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 BLVRAP53004 296 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 AMPD2Q01433 879 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 MAN2A1Q16706 1144 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 LDHAL6AQ6ZMR3 332 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 STOX1Q6ZVD7 989 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 CRACR2BQ8N4Y2 399 aaPredicted RBP6.98□□□□□ -1.29
VPS35-201ENST00000299138 IFIH1Q9BYX4 1025 aaKnown RBP6.98□□□□□ -1.29
VPS35-201ENST00000299138 METTL14Q9HCE5 456 aaKnown RBP6.98□□□□□ -1.29
VPS35-201ENST00000299138 SFMBT1Q9UHJ3 866 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 AFG3L2Q9Y4W6 797 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 XRN1Q8IZH2 1706 aaKnown RBP6.98□□□□□ -1.29
VPS35-201ENST00000299138 RIMS1Q86UR5 1692 aaKnown RBP6.98□□□□□ -1.29
VPS35-201ENST00000299138 PJA2O43164 708 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 MMP14P50281 582 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 BASP1P80723 227 aaKnown RBP6.98□□□□□ -1.29
VPS35-201ENST00000299138 SF3B3Q15393 1217 aaKnown RBP6.98□□□□□ -1.29
VPS35-201ENST00000299138 CDC37Q16543 378 aaPredicted RBP6.98□□□□□ -1.29
VPS35-201ENST00000299138 ARHGAP44Q17R89 818 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 TCP11X2Q5H9J9 407 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 CCDC82Q8N4S0 544 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 ANKZF1Q9H8Y5 726 aa6.98□□□□□ -1.29
VPS35-201ENST00000299138 ERVV-1B6SEH8 477 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 RFX1P22670 979 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 IRAK1P51617 712 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 RBL2Q08999 1139 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 DAGLBQ8NCG7 672 aa6.97□□□□□ -1.29
VPS35-201ENST00000299138 TUBB6Q9BUF5 446 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms