RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.5■□□□□ 0.55
VPS54-201ENST00000272322 IKZF4Q9H2S9 585 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 NDST4Q9H3R1 872 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 CAPN11Q9UMQ6 739 aa18.5■□□□□ 0.55
VPS54-201ENST00000272322 POLRMTO00411 1230 aaKnown RBP18.49■□□□□ 0.55
VPS54-201ENST00000272322 ZBTB22O15209 634 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 CHMP2AO43633 222 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 MMP10P09238 476 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 SHMT1P34896 483 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 C2orf54Q08AI8 447 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 PABPC4Q13310 644 aaKnown RBP eCLIP18.49■□□□□ 0.55
VPS54-201ENST00000272322 KCNB1Q14721 858 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 MIIPQ5JXC2 388 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 CYP2W1Q8TAV3 490 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 DHTKD1Q96HY7 919 aaPredicted RBP18.49■□□□□ 0.55
VPS54-201ENST00000272322 THAP9Q9H5L6 903 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 RABEP2Q9H5N1 569 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 SRGNP10124 158 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 EIF4A3P38919 411 aaKnown RBP18.49■□□□□ 0.55
VPS54-201ENST00000272322 GABPB1Q06547 395 aaPredicted RBP18.49■□□□□ 0.55
VPS54-201ENST00000272322 ZNF543Q08ER8 600 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 SPA17Q15506 151 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 GALNT17Q6IS24 598 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 ITIH6Q6UXX5 1313 aa18.49■□□□□ 0.55
VPS54-201ENST00000272322 BICDL2A1A5D9 508 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 ZNF263O14978 683 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 SLC7A5Q01650 507 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 GFPT1Q06210 699 aaPredicted RBP18.48■□□□□ 0.55
VPS54-201ENST00000272322 QRICH1Q2TAL8 776 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 TBC1D22AQ8WUA7 517 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 BCS1LQ9Y276 419 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 LRRC53A6NM62 1247 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 CRY2Q49AN0 593 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 DAGLBQ8NCG7 672 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 RIOX1Q9H6W3 641 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 TDRD3Q9H7E2 651 aaKnown RBP18.48■□□□□ 0.55
VPS54-201ENST00000272322 PKD2L1Q9P0L9 805 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 SAR1BQ9Y6B6 198 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 HLA-DOAP06340 250 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 CHRNA5P30532 468 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 KIF5AQ12840 1032 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 MAPK8IP2Q13387 824 aaPredicted RBP18.48■□□□□ 0.55
VPS54-201ENST00000272322 CCDC84Q86UT8 332 aaPredicted RBP18.48■□□□□ 0.55
VPS54-201ENST00000272322 PROM2Q8N271 834 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 HAS1Q92839 578 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 TEKT1Q969V4 418 aa18.48■□□□□ 0.55
VPS54-201ENST00000272322 CYLC1P35663 651 aaPredicted RBP18.47■□□□□ 0.55
VPS54-201ENST00000272322 RASSF7Q02833 373 aa18.47■□□□□ 0.55
VPS54-201ENST00000272322 EZH2Q15910 746 aaKnown RBP18.47■□□□□ 0.55
VPS54-201ENST00000272322 CT47A1Q5JQC4 288 aaPredicted RBP18.47■□□□□ 0.55
VPS54-201ENST00000272322 UTP14CQ5TAP6 766 aaKnown RBP18.47■□□□□ 0.55
VPS54-201ENST00000272322 CUL5Q93034 780 aa18.47■□□□□ 0.55
VPS54-201ENST00000272322 AK8Q96MA6 479 aa18.47■□□□□ 0.55
VPS54-201ENST00000272322 IFIH1Q9BYX4 1025 aaKnown RBP18.47■□□□□ 0.55
VPS54-201ENST00000272322 CAPN6Q9Y6Q1 641 aa18.47■□□□□ 0.55
VPS54-201ENST00000272322 KRT86O43790 486 aa18.47■□□□□ 0.55
VPS54-201ENST00000272322 PSMC6P62333 389 aa18.47■□□□□ 0.55
VPS54-201ENST00000272322 TCERG1LQ5VWI1 586 aa18.47■□□□□ 0.55
VPS54-201ENST00000272322 C7orf25Q9BPX7 421 aa18.47■□□□□ 0.55
VPS54-201ENST00000272322 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.47■□□□□ 0.552e-10■■■■■ 72.1
VPS54-201ENST00000272322 PANK4Q9NVE7 773 aa18.47■□□□□ 0.55
VPS54-201ENST00000272322 HSPA1LP34931 641 aa18.47■□□□□ 0.55
VPS54-201ENST00000272322 MTMR9Q96QG7 549 aa18.47■□□□□ 0.55
VPS54-201ENST00000272322 PACSIN2Q9UNF0 486 aaPredicted RBP18.47■□□□□ 0.55
VPS54-201ENST00000272322 TNRC6CQ9HCJ0 1690 aaKnown RBP18.46■□□□□ 0.55
VPS54-201ENST00000272322 PNMA6FA0A0J9YX94 578 aa18.46■□□□□ 0.55
VPS54-201ENST00000272322 CLRN2A0PK11 232 aa18.46■□□□□ 0.55
VPS54-201ENST00000272322 PDE2AO00408 941 aaPredicted RBP18.46■□□□□ 0.55
VPS54-201ENST00000272322 LAD1O00515 517 aa18.46■□□□□ 0.55
VPS54-201ENST00000272322 PRPHP41219 470 aa18.46■□□□□ 0.55
VPS54-201ENST00000272322 TBC1D10BQ4KMP7 808 aaPredicted RBP18.46■□□□□ 0.55
VPS54-201ENST00000272322 SLFN13Q68D06 897 aa18.46■□□□□ 0.55
VPS54-201ENST00000272322 APOBEC3HQ6NTF7 200 aaKnown RBP18.46■□□□□ 0.55
VPS54-201ENST00000272322 GPBP1Q86WP2 473 aa18.46■□□□□ 0.55
VPS54-201ENST00000272322 GOLPH3Q9H4A6 298 aa18.46■□□□□ 0.55
VPS54-201ENST00000272322 ARHGAP20Q9P2F6 1191 aa18.46■□□□□ 0.55
VPS54-201ENST00000272322 CRKP46108 304 aa18.46■□□□□ 0.55
VPS54-201ENST00000272322 MRPL12P52815 198 aaKnown RBP18.46■□□□□ 0.55
VPS54-201ENST00000272322 TRIM14Q14142 442 aa18.46■□□□□ 0.55
VPS54-201ENST00000272322 CERKLQ49MI3 558 aaPredicted RBP18.46■□□□□ 0.55
VPS54-201ENST00000272322 VWA3BQ502W6 1294 aa18.46■□□□□ 0.55
VPS54-201ENST00000272322 PROCA1Q8NCQ7 364 aaPredicted RBP18.46■□□□□ 0.55
VPS54-201ENST00000272322 RAB34Q9BZG1 259 aa18.46■□□□□ 0.55
VPS54-201ENST00000272322 POLR2FP61218 127 aaKnown RBP18.46■□□□□ 0.54
VPS54-201ENST00000272322 PLS1Q14651 629 aa18.46■□□□□ 0.54
VPS54-201ENST00000272322 RAD54LQ92698 747 aa18.46■□□□□ 0.54
VPS54-201ENST00000272322 DNAJC18Q9H819 358 aa18.46■□□□□ 0.54
VPS54-201ENST00000272322 MAEAQ7L5Y9 396 aa18.45■□□□□ 0.54
VPS54-201ENST00000272322 COG1Q8WTW3 980 aa18.45■□□□□ 0.54
VPS54-201ENST00000272322 DNAJC7Q99615 494 aa18.45■□□□□ 0.54
VPS54-201ENST00000272322 HAUS4Q9H6D7 363 aa18.45■□□□□ 0.54
VPS54-201ENST00000272322 BMP2KQ9NSY1 1161 aaPredicted RBP18.45■□□□□ 0.54
VPS54-201ENST00000272322 EPS15P42566 896 aa18.45■□□□□ 0.54
VPS54-201ENST00000272322 ZBED6P86452 979 aa18.45■□□□□ 0.54
VPS54-201ENST00000272322 ASPRV1Q53RT3 343 aa18.45■□□□□ 0.54
VPS54-201ENST00000272322 NFRKBQ6P4R8 1299 aa18.45■□□□□ 0.54
VPS54-201ENST00000272322 KRT83P78385 493 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 COASYQ13057 564 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 FAM26FQ5R3K3 315 aa18.44■□□□□ 0.54
VPS54-201ENST00000272322 COL23A1Q86Y22 540 aaPredicted RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms