RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 IL31RAQ8NI17 732 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 SPC25Q9HBM1 224 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 C6orf50Q9HD87 102 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 SYNRGQ9UMZ2 1314 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 ST18O60284 1047 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 ADAMTS4O75173 837 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 DUSP28Q4G0W2 176 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 TMEM63BQ5T3F8 832 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 SEPT14Q6ZU15 432 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 CCDC148Q8NFR7 591 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 ZSCAN31Q96LW9 406 aaPredicted RBP19.2■□□□□ 0.66
SDCBP-201ENST00000260130 SH3GLB2Q9NR46 395 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 PCDHA6Q9UN73 950 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 PCDHA8Q9Y5H6 950 aa19.2■□□□□ 0.66
SDCBP-201ENST00000260130 DDX11L8A8MPP1 907 aa19.19■□□□□ 0.66
SDCBP-201ENST00000260130 GJA9P57773 515 aa19.19■□□□□ 0.66
SDCBP-201ENST00000260130 VPS54Q9P1Q0 977 aa19.19■□□□□ 0.66
SDCBP-201ENST00000260130 Q9Y3F1 56 aa19.19■□□□□ 0.66
SDCBP-201ENST00000260130 KBTBD13C9JR72 458 aa19.19■□□□□ 0.66
SDCBP-201ENST00000260130 FOSP01100 380 aaPredicted RBP19.19■□□□□ 0.66
SDCBP-201ENST00000260130 GNA11P29992 359 aa19.19■□□□□ 0.66
SDCBP-201ENST00000260130 TTLL4Q14679 1199 aa19.19■□□□□ 0.66
SDCBP-201ENST00000260130 UPF3AQ9H1J1 476 aaKnown RBP19.19■□□□□ 0.66
SDCBP-201ENST00000260130 C11orf49Q9H6J7 331 aa19.19■□□□□ 0.66
SDCBP-201ENST00000260130 LRRC37A2A6NM11 1700 aa19.19■□□□□ 0.66
SDCBP-201ENST00000260130 STK36Q9NRP7 1315 aa19.18■□□□□ 0.66
SDCBP-201ENST00000260130 DYNC1LI2O43237 492 aaPredicted RBP19.18■□□□□ 0.66
SDCBP-201ENST00000260130 C6orf222P0C671 652 aaPredicted RBP19.18■□□□□ 0.66
SDCBP-201ENST00000260130 TXNP10599 105 aaKnown RBP19.18■□□□□ 0.66
SDCBP-201ENST00000260130 COL6A1P12109 1028 aa19.18■□□□□ 0.66
SDCBP-201ENST00000260130 CLK2P49760 499 aaKnown RBP19.18■□□□□ 0.66
SDCBP-201ENST00000260130 XRRA1Q6P2D8 792 aa19.18■□□□□ 0.66
SDCBP-201ENST00000260130 TLK2Q86UE8 772 aa19.18■□□□□ 0.66
SDCBP-201ENST00000260130 KLHDC9Q8NEP7 349 aa19.18■□□□□ 0.66
SDCBP-201ENST00000260130 AP5M1Q9H0R1 490 aa19.18■□□□□ 0.66
SDCBP-201ENST00000260130 GOLGA6L3A6NEY3 463 aa19.17■□□□□ 0.66
SDCBP-201ENST00000260130 NKRFO15226 690 aaKnown RBP eCLIP19.17■□□□□ 0.663e-7■■■■□ 24.1
SDCBP-201ENST00000260130 DTNBO60941 627 aa19.17■□□□□ 0.66
SDCBP-201ENST00000260130 STAM2O75886 525 aa19.17■□□□□ 0.66
SDCBP-201ENST00000260130 MRPS9P82933 396 aaKnown RBP19.17■□□□□ 0.66
SDCBP-201ENST00000260130 PCNX4Q63HM2 1172 aa19.17■□□□□ 0.66
SDCBP-201ENST00000260130 CCDC62Q6P9F0 684 aa19.17■□□□□ 0.66
SDCBP-201ENST00000260130 ZFP91Q96JP5 570 aaPredicted RBP19.17■□□□□ 0.66
SDCBP-201ENST00000260130 AIFM3Q96NN9 605 aa19.17■□□□□ 0.66
SDCBP-201ENST00000260130 EHMT1Q9H9B1 1298 aa19.17■□□□□ 0.66
SDCBP-201ENST00000260130 SH2B1Q9NRF2 756 aaPredicted RBP19.17■□□□□ 0.66
SDCBP-201ENST00000260130 CIZ1Q9ULV3 898 aaPredicted RBP19.17■□□□□ 0.66
SDCBP-201ENST00000260130 RGS20O76081 388 aa19.17■□□□□ 0.66
SDCBP-201ENST00000260130 ARIH2O95376 493 aa19.17■□□□□ 0.66
SDCBP-201ENST00000260130 PTGS1P23219 599 aa19.17■□□□□ 0.66
SDCBP-201ENST00000260130 NKX3-2P78367 333 aa19.17■□□□□ 0.66
SDCBP-201ENST00000260130 AP3B2Q13367 1082 aa19.17■□□□□ 0.66
SDCBP-201ENST00000260130 BICD2Q8TD16 824 aa19.17■□□□□ 0.66
SDCBP-201ENST00000260130 TMEM260Q9NX78 707 aa19.17■□□□□ 0.66
SDCBP-201ENST00000260130 ORC3Q9UBD5 711 aaPredicted RBP19.17■□□□□ 0.66
SDCBP-201ENST00000260130 CST5P28325 142 aaPredicted RBP19.16■□□□□ 0.66
SDCBP-201ENST00000260130 NLRP5P59047 1200 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 IRX5P78411 483 aaPredicted RBP19.16■□□□□ 0.66
SDCBP-201ENST00000260130 ST3GAL1Q11201 340 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 GNASQ5JWF2 1037 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 MCTP2Q6DN12 878 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 FAM177A1Q8N128 213 aaPredicted RBP19.16■□□□□ 0.66
SDCBP-201ENST00000260130 NSUN7Q8NE18 718 aaKnown RBP19.16■□□□□ 0.66
SDCBP-201ENST00000260130 TSEN34Q9BSV6 310 aaKnown RBP19.16■□□□□ 0.66
SDCBP-201ENST00000260130 SENP6Q9GZR1 1112 aaPredicted RBP19.16■□□□□ 0.66
SDCBP-201ENST00000260130 FRMPD3Q5JV73 1810 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 MYADML2A6NDP7 307 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 CTAGE5O15320 804 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 TRAK2O60296 914 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 GNPTABQ3T906 1256 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 JAKMIP3Q5VZ66 844 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 KCNV1Q6PIU1 500 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 CCDC83Q8IWF9 413 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 REXO1Q8N1G1 1221 aaKnown RBP19.16■□□□□ 0.66
SDCBP-201ENST00000260130 WASF1Q92558 559 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 PGBD1Q96JS3 809 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 HTATIP2Q9BUP3 242 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 RTEL1Q9NZ71 1219 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 MRVI1Q9Y6F6 885 aa19.16■□□□□ 0.66
SDCBP-201ENST00000260130 ADAMTS3O15072 1205 aa19.15■□□□□ 0.66
SDCBP-201ENST00000260130 FDPSP14324 419 aaKnown RBP19.15■□□□□ 0.66
SDCBP-201ENST00000260130 DDIT3P35638 169 aa19.15■□□□□ 0.66
SDCBP-201ENST00000260130 KCNA10Q16322 511 aa19.15■□□□□ 0.66
SDCBP-201ENST00000260130 LY6KQ17RY6 165 aa19.15■□□□□ 0.66
SDCBP-201ENST00000260130 CCSAPQ6IQ19 270 aaPredicted RBP19.15■□□□□ 0.66
SDCBP-201ENST00000260130 PCSK9Q8NBP7 692 aaKnown RBP19.15■□□□□ 0.66
SDCBP-201ENST00000260130 COPS5Q92905 334 aa19.15■□□□□ 0.66
SDCBP-201ENST00000260130 INPP4AQ96PE3 977 aaPredicted RBP19.15■□□□□ 0.66
SDCBP-201ENST00000260130 ANO3Q9BYT9 981 aa19.15■□□□□ 0.66
SDCBP-201ENST00000260130 DDX41Q9UJV9 622 aaKnown RBP19.15■□□□□ 0.66
SDCBP-201ENST00000260130 FSD2A1L4K1 749 aa19.15■□□□□ 0.66
SDCBP-201ENST00000260130 TGFB3P10600 412 aa19.15■□□□□ 0.66
SDCBP-201ENST00000260130 PHF24Q9UPV7 400 aa19.15■□□□□ 0.66
SDCBP-201ENST00000260130 TNRC18O15417 2968 aaPredicted RBP19.14■□□□□ 0.66
SDCBP-201ENST00000260130 XBP1P17861 261 aa19.14■□□□□ 0.65
SDCBP-201ENST00000260130 BEX3Q00994 111 aa19.14■□□□□ 0.65
SDCBP-201ENST00000260130 FSCN1Q16658 493 aaKnown RBP19.14■□□□□ 0.65
SDCBP-201ENST00000260130 OR6J1Q8NGC5 347 aa19.14■□□□□ 0.65
SDCBP-201ENST00000260130 PCDHA4Q9UN74 947 aa19.14■□□□□ 0.65
SDCBP-201ENST00000260130 MOXD2PA6NHM9 499 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms