RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 IFT81Q8WYA0 676 aa13.74□□□□□ -0.21
NUP88-201ENST00000225696 PNMA5Q96PV4 448 aa13.74□□□□□ -0.21
NUP88-201ENST00000225696 VAT1LQ9HCJ6 419 aa13.74□□□□□ -0.21
NUP88-201ENST00000225696 BIN2Q9UBW5 565 aaPredicted RBP13.74□□□□□ -0.21
NUP88-201ENST00000225696 PALM3A6NDB9 673 aaPredicted RBP13.73□□□□□ -0.21
NUP88-201ENST00000225696 KLRF2D3W0D1 207 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 EDIL3O43854 480 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 FTCDO95954 541 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 GUCY2FP51841 1108 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 NAPAP54920 295 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 GUCY1A3Q02108 690 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 NNTQ13423 1086 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 DIXDC1Q155Q3 683 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 KCNV1Q6PIU1 500 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 LRRC55Q6ZSA7 311 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 TBCKQ8TEA7 893 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 GJA10Q969M2 543 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 RNPC3Q96LT9 517 aaKnown RBP13.73□□□□□ -0.21
NUP88-201ENST00000225696 CCDC43Q96MW1 224 aaKnown RBP13.73□□□□□ -0.21
NUP88-201ENST00000225696 ZMYND12Q9H0C1 365 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 RREB1Q92766 1687 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 SMCO2A6NFE2 343 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 LAD1O00515 517 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 ZEB2O60315 1214 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 EPB41P11171 864 aaKnown RBP13.73□□□□□ -0.21
NUP88-201ENST00000225696 HIBADHP31937 336 aaKnown RBP13.73□□□□□ -0.21
NUP88-201ENST00000225696 NAP1L1P55209 391 aaKnown RBP13.73□□□□□ -0.21
NUP88-201ENST00000225696 GUCY2DQ02846 1103 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 CNNM4Q6P4Q7 775 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 EMBQ6PCB8 327 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 USP17L2Q6R6M4 530 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 DNAAF5Q86Y56 855 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 IQCKQ8N0W5 287 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 PROCA1Q8NCQ7 364 aaPredicted RBP13.73□□□□□ -0.21
NUP88-201ENST00000225696 CAVIN3Q969G5 261 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 AK8Q96MA6 479 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 CUEDC2Q9H467 287 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 MKNK2Q9HBH9 465 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 EPB41L5Q9HCM4 733 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 SAP30BPQ9UHR5 308 aaKnown RBP13.73□□□□□ -0.21
NUP88-201ENST00000225696 LAMB1P07942 1786 aa13.73□□□□□ -0.21
NUP88-201ENST00000225696 POTEMA6NI47 508 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 PJA2O43164 708 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 SLC37A4O43826 429 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 HSF2BPO75031 334 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 PALMO75781 387 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 NOL4O94818 638 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 TSPY3P0CV98 308 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 TSPY8P0CW00 308 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 GUCY2CP25092 1073 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 SF3B3Q15393 1217 aaKnown RBP13.72□□□□□ -0.21
NUP88-201ENST00000225696 MAN2A1Q16706 1144 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 PDXDC1Q6P996 788 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 ANKS1AQ92625 1134 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 ALS2CR12Q96Q35 445 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 FGFBP2Q9BYJ0 223 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 OPA1O60313 960 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 HEXIM1O94992 359 aaKnown RBP13.72□□□□□ -0.21
NUP88-201ENST00000225696 SKOR1P84550 965 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 NONOQ15233 471 aaKnown RBP eCLIP13.72□□□□□ -0.21
NUP88-201ENST00000225696 ENOX2Q16206 610 aaKnown RBP13.72□□□□□ -0.21
NUP88-201ENST00000225696 ECM1Q16610 540 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 ALS2CLQ60I27 953 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 UIMC1Q96RL1 719 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 PACSIN1Q9BY11 444 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 GDF3Q9NR23 364 aa13.72□□□□□ -0.21
NUP88-201ENST00000225696 NDUFAB1O14561 156 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 KLRC1P26715 233 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 HNRNPH1P31943 449 aaKnown RBP13.71□□□□□ -0.21
NUP88-201ENST00000225696 PAFAH1B1P43034 410 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 SEC24CP53992 1094 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 ARID5AQ03989 594 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 PTPROQ16827 1216 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 TDRD12Q587J7 1177 aaKnown RBP13.71□□□□□ -0.21
NUP88-201ENST00000225696 GBP6Q6ZN66 633 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 MMS22LQ6ZRQ5 1243 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 SV2BQ7L1I2 683 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 NEK8Q86SG6 692 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 TGFBRAP1Q8WUH2 860 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 CASKIN2Q8WXE0 1202 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 CCDC47Q96A33 483 aaKnown RBP13.71□□□□□ -0.21
NUP88-201ENST00000225696 KRT12Q99456 494 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 UBA5Q9GZZ9 404 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 GOLPH3Q9H4A6 298 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 MAGEF1Q9HAY2 307 aa13.71□□□□□ -0.21
NUP88-201ENST00000225696 CASZ1Q86V15 1759 aa13.71□□□□□ -0.22
NUP88-201ENST00000225696 SHTN1A0MZ66 631 aa13.71□□□□□ -0.22
NUP88-201ENST00000225696 TDP2O95551 362 aa13.71□□□□□ -0.22
NUP88-201ENST00000225696 SEMA3FQ13275 785 aa13.71□□□□□ -0.22
NUP88-201ENST00000225696 CACNA2D4Q7Z3S7 1137 aa13.71□□□□□ -0.22
NUP88-201ENST00000225696 NOX5Q96PH1 765 aa13.71□□□□□ -0.22
NUP88-201ENST00000225696 PIGSQ96S52 555 aa13.71□□□□□ -0.22
NUP88-201ENST00000225696 RUFY1Q96T51 708 aa13.71□□□□□ -0.22
NUP88-201ENST00000225696 TANGO6Q9C0B7 1094 aa13.71□□□□□ -0.22
NUP88-201ENST00000225696 COL16A1Q07092 1604 aaPredicted RBP13.7□□□□□ -0.22
NUP88-201ENST00000225696 DOT1LQ8TEK3 1739 aa13.7□□□□□ -0.22
NUP88-201ENST00000225696 GOLGB1Q14789 3259 aaKnown RBP13.7□□□□□ -0.22
NUP88-201ENST00000225696 MYO1FO00160 1098 aa13.7□□□□□ -0.22
NUP88-201ENST00000225696 RASA1P20936 1047 aa13.7□□□□□ -0.22
NUP88-201ENST00000225696 TNFRSF8P28908 595 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms