RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W RPS8AP0CX39 200 aaKnown RBP0.78□□□□□ -2.29
PRP42YDR235W RPS8BP0CX40 200 aaKnown RBP0.78□□□□□ -2.29
PRP42YDR235W SUI2P20459 304 aaKnown RBP0.78□□□□□ -2.29
PRP42YDR235W IMG1P25626 169 aa0.78□□□□□ -2.29
PRP42YDR235W GLC7P32598 312 aaKnown RBP0.78□□□□□ -2.29
PRP42YDR235W SEF1P34228 1148 aa0.78□□□□□ -2.29
PRP42YDR235W KKQ8P36004 724 aa0.78□□□□□ -2.29
PRP42YDR235W MAL33P38157 468 aa0.78□□□□□ -2.29
PRP42YDR235W MIX23P38162 196 aa0.78□□□□□ -2.29
PRP42YDR235W VID24P38263 362 aa0.78□□□□□ -2.29
PRP42YDR235W AFG3P39925 761 aa0.78□□□□□ -2.29
PRP42YDR235W IES5P40060 125 aa0.78□□□□□ -2.29
PRP42YDR235W LYS4P49367 693 aaPredicted RBP0.78□□□□□ -2.29
PRP42YDR235W APT1P49435 187 aaKnown RBP0.78□□□□□ -2.29
PRP42YDR235W YGR127WP53275 312 aa0.78□□□□□ -2.29
PRP42YDR235W RAD30Q04049 632 aa0.78□□□□□ -2.29
PRP42YDR235W VMS1Q04311 632 aaKnown RBP0.78□□□□□ -2.29
PRP42YDR235W RBS1Q05672 457 aaKnown RBP0.78□□□□□ -2.29
PRP42YDR235W VIP1Q06685 1146 aaKnown RBP0.78□□□□□ -2.29
PRP42YDR235W RIX7Q07844 837 aaKnown RBP0.78□□□□□ -2.29
PRP42YDR235W KEL3Q08979 651 aaPredicted RBP0.78□□□□□ -2.29
PRP42YDR235W RKM5Q12367 367 aa0.78□□□□□ -2.29
PRP42YDR235W SKM1Q12469 655 aa0.78□□□□□ -2.29
PRP42YDR235W FUM1P08417 488 aaKnown RBP0.77□□□□□ -2.29
PRP42YDR235W CDC24P11433 854 aaPredicted RBP0.77□□□□□ -2.29
PRP42YDR235W NUP2P32499 720 aa0.77□□□□□ -2.29
PRP42YDR235W UBP11P36026 717 aa0.77□□□□□ -2.29
PRP42YDR235W FRE2P36033 711 aa0.77□□□□□ -2.29
PRP42YDR235W RRN3P36070 627 aa0.77□□□□□ -2.29
PRP42YDR235W STB6P36085 766 aa0.77□□□□□ -2.29
PRP42YDR235W AUR1P36107 401 aaPredicted RBP0.77□□□□□ -2.29
PRP42YDR235W CHS6P40955 746 aa0.77□□□□□ -2.29
PRP42YDR235W OST1P41543 476 aaKnown RBP0.77□□□□□ -2.29
PRP42YDR235W FAR3P46671 204 aa0.77□□□□□ -2.29
PRP42YDR235W SIP4P46954 829 aa0.77□□□□□ -2.29
PRP42YDR235W NCA3P46955 337 aa0.77□□□□□ -2.29
PRP42YDR235W YJR085CP47131 105 aaKnown RBP0.77□□□□□ -2.29
PRP42YDR235W BRO1P48582 844 aa0.77□□□□□ -2.29
PRP42YDR235W POP6P53218 158 aa0.77□□□□□ -2.29
PRP42YDR235W HER2Q03557 464 aa0.77□□□□□ -2.29
PRP42YDR235W BUD22Q04347 519 aaKnown RBP0.77□□□□□ -2.29
PRP42YDR235W YPR091CQ06833 770 aa0.77□□□□□ -2.29
PRP42YDR235W HSH49Q99181 213 aaPredicted RBP0.77□□□□□ -2.29
PRP42YDR235W MF(ALPHA)1P01149 165 aa0.76□□□□□ -2.29
PRP42YDR235W ARD1P07347 238 aaPredicted RBP0.76□□□□□ -2.29
PRP42YDR235W GLK1P17709 500 aaKnown RBP0.76□□□□□ -2.29
PRP42YDR235W POL4P25615 582 aa0.76□□□□□ -2.29
PRP42YDR235W YIH1P25637 258 aa0.76□□□□□ -2.29
PRP42YDR235W CRM1P30822 1084 aaKnown RBP0.76□□□□□ -2.29
PRP42YDR235W SSE2P32590 693 aaKnown RBP0.76□□□□□ -2.29
PRP42YDR235W YBR144CP34215 104 aa0.76□□□□□ -2.29
PRP42YDR235W MRPL10P36520 322 aa0.76□□□□□ -2.29
PRP42YDR235W CHK1P38147 527 aa0.76□□□□□ -2.29
PRP42YDR235W DUG2P38149 878 aa0.76□□□□□ -2.29
PRP42YDR235W YBL029WP38201 376 aa0.76□□□□□ -2.29
PRP42YDR235W CIN4P39110 191 aa0.76□□□□□ -2.29
PRP42YDR235W DPH1P40487 425 aaKnown RBP0.76□□□□□ -2.29
PRP42YDR235W LYS14P40971 790 aa0.76□□□□□ -2.29
PRP42YDR235W GAB1P41733 394 aa0.76□□□□□ -2.29
PRP42YDR235W ARC1P46672 376 aaKnown RBP0.76□□□□□ -2.29
PRP42YDR235W LCL3P53153 274 aa0.76□□□□□ -2.29
PRP42YDR235W YSA1Q01976 231 aa0.76□□□□□ -2.29
PRP42YDR235W YML131WQ03102 365 aa0.76□□□□□ -2.29
PRP42YDR235W YML037CQ03703 340 aa0.76□□□□□ -2.29
PRP42YDR235W YMR018WQ04364 514 aa0.76□□□□□ -2.29
PRP42YDR235W LUC7Q07508 261 aaPredicted RBP0.76□□□□□ -2.29
PRP42YDR235W CUE5Q08412 411 aaKnown RBP0.76□□□□□ -2.29
PRP42YDR235W PRM7Q12459 698 aa0.76□□□□□ -2.29
PRP42YDR235W EST1P17214 699 aaPredicted RBP0.75□□□□□ -2.29
PRP42YDR235W ART10P18634 518 aaKnown RBP0.75□□□□□ -2.29
PRP42YDR235W YCK1P23291 538 aa0.75□□□□□ -2.29
PRP42YDR235W PWP2P25635 923 aaKnown RBP0.75□□□□□ -2.29
PRP42YDR235W BUB3P26449 341 aa0.75□□□□□ -2.29
PRP42YDR235W CHS3P29465 1165 aa0.75□□□□□ -2.29
PRP42YDR235W MNS1P32906 549 aa0.75□□□□□ -2.29
PRP42YDR235W RSM22P36056 628 aa0.75□□□□□ -2.29
PRP42YDR235W VPS24P36095 224 aaKnown RBP0.75□□□□□ -2.29
PRP42YDR235W FUI1P38196 639 aa0.75□□□□□ -2.29
PRP42YDR235W YHR131CP38835 850 aa0.75□□□□□ -2.29
PRP42YDR235W SEO1P39709 593 aa0.75□□□□□ -2.29
PRP42YDR235W RTS3P53289 263 aa0.75□□□□□ -2.29
PRP42YDR235W OGG1P53397 376 aaPredicted RBP0.75□□□□□ -2.29
PRP42YDR235W IPI3P53877 555 aa0.75□□□□□ -2.29
PRP42YDR235W VHS1Q03785 461 aa0.75□□□□□ -2.29
PRP42YDR235W YKU80Q04437 629 aa0.75□□□□□ -2.29
PRP42YDR235W THP1Q08231 455 aa0.75□□□□□ -2.29
PRP42YDR235W SSP2Q08646 371 aa0.75□□□□□ -2.29
PRP42YDR235W YPL199CQ08954 240 aa0.75□□□□□ -2.29
PRP42YDR235W FMP40Q08968 688 aaPredicted RBP0.75□□□□□ -2.29
PRP42YDR235W YPQ1Q12010 308 aa0.75□□□□□ -2.29
PRP42YDR235W HUA2Q12134 243 aa0.75□□□□□ -2.29
PRP42YDR235W SGS1P35187 1447 aa0.75□□□□□ -2.29
PRP42YDR235W CCH1P50077 2039 aa0.75□□□□□ -2.29
PRP42YDR235W NFT1P0CE68 1218 aa0.75□□□□□ -2.29
PRP42YDR235W RPL19AP0CX82 189 aaKnown RBP0.75□□□□□ -2.29
PRP42YDR235W RPL19BP0CX83 189 aaPredicted RBP0.75□□□□□ -2.29
PRP42YDR235W SAM1P10659 382 aaKnown RBP0.75□□□□□ -2.29
PRP42YDR235W MRP13P12686 339 aa0.75□□□□□ -2.29
PRP42YDR235W KAR3P17119 729 aa0.75□□□□□ -2.29
PRP42YDR235W SAM2P19358 384 aaKnown RBP0.75□□□□□ -2.29
Retrieved 100 of 5,963 RNA–protein pairs in 20.3 ms