RNA–Protein interactions for RNA: ENST00000621016.4

CDH1-214, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 3,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-214ENST00000621016 MYH15Q9Y2K3 1946 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 SMCO2A6NFE2 343 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 ZNF185O15231 689 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 BMP15O95972 392 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 VSNL1P62760 191 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 ARID5AQ03989 594 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 STK4Q13043 487 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 TBC1D25Q3MII6 688 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 LRRC47Q8N1G4 583 aaKnown RBP11.87□□□□□ -0.51
CDH1-214ENST00000621016 KLHL23Q8NBE8 558 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 TNFRSF25Q93038 417 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 NAPGQ99747 312 aaPredicted RBP11.87□□□□□ -0.51
CDH1-214ENST00000621016 TMEM47Q9BQJ4 181 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 FAM107BQ9H098 131 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 MMRN2Q9H8L6 949 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 PCDHA4Q9UN74 947 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 C6orf229H3BNL8 230 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 PSMA7O14818 248 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 TUBB4AP04350 444 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 CALML3P27482 149 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 CXCR5P32302 372 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 RPS6KA3P51812 740 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 PTPROQ16827 1216 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 SOGA3Q5TF21 947 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 BCAS4Q8TDM0 211 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 RABGGTAQ92696 567 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 ATP8A2Q9NTI2 1148 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 COL4A1P02462 1669 aa11.87□□□□□ -0.51
CDH1-214ENST00000621016 A0A1B0GUA9 196 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 PLEKP08567 350 aaPredicted RBP11.86□□□□□ -0.51
CDH1-214ENST00000621016 RFC4P35249 363 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 RWDD2BP57060 319 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 STIM1Q13586 685 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 PPP2R5BQ15173 497 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 SLC35G1Q2M3R5 365 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 TMTC1Q8IUR5 882 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 TBC1D31Q96DN5 1066 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 PIGSQ96S52 555 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 RWDD2AQ9UIY3 292 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 PCDHA6Q9UN73 950 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 PCDHA8Q9Y5H6 950 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 SPATA31A1Q5TZJ5 1347 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 SNUPNO95149 360 aaKnown RBP11.86□□□□□ -0.51
CDH1-214ENST00000621016 NDUFA10O95299 355 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 RNASE9P60153 205 aaKnown RBP11.86□□□□□ -0.51
CDH1-214ENST00000621016 CACNB1Q02641 598 aaPredicted RBP11.86□□□□□ -0.51
CDH1-214ENST00000621016 NAALADL2Q58DX5 795 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 CABP7Q86V35 215 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 MYLK4Q86YV6 388 aaPredicted RBP11.86□□□□□ -0.51
CDH1-214ENST00000621016 LRRC15Q8TF66 581 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 TUBGCP2Q9BSJ2 902 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 EXOC1Q9NV70 894 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 ARPP21Q9UBL0 812 aaPredicted RBP11.86□□□□□ -0.51
CDH1-214ENST00000621016 TOGARAM1Q9Y4F4 1720 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 MYO1BO43795 1136 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 TNNI2P48788 182 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 SF3A3Q12874 501 aaKnown RBP eCLIP11.86□□□□□ -0.51
CDH1-214ENST00000621016 CEP85LQ5SZL2 805 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 IRF2BP1Q8IU81 584 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 CCDC155Q8N6L0 562 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 OR8K1Q8NGG5 319 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 SMARCC1Q92922 1105 aaPredicted RBP11.86□□□□□ -0.51
CDH1-214ENST00000621016 CDK5RAP3Q96JB5 506 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 EYA3Q99504 573 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 NOC4LQ9BVI4 516 aaKnown RBP11.86□□□□□ -0.51
CDH1-214ENST00000621016 ANKZF1Q9H8Y5 726 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 SMARCAL1Q9NZC9 954 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 CCNL1Q9UK58 526 aaPredicted RBP11.86□□□□□ -0.51
CDH1-214ENST00000621016 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.86□□□□□ -0.51
CDH1-214ENST00000621016 C4AP0C0L4 1744 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 C4BP0C0L5 1744 aa11.86□□□□□ -0.51
CDH1-214ENST00000621016 PARP4Q9UKK3 1724 aaKnown RBP11.86□□□□□ -0.51
CDH1-214ENST00000621016 SPEF2Q9C093 1822 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 ATP1A1P05023 1023 aaKnown RBP11.85□□□□□ -0.51
CDH1-214ENST00000621016 SF3B3Q15393 1217 aaKnown RBP11.85□□□□□ -0.51
CDH1-214ENST00000621016 CCDC96Q2M329 555 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.85□□□□□ -0.51
CDH1-214ENST00000621016 RSRC2Q7L4I2 434 aaKnown RBP11.85□□□□□ -0.51
CDH1-214ENST00000621016 RMND1Q9NWS8 449 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 SEC63Q9UGP8 760 aaKnown RBP11.85□□□□□ -0.51
CDH1-214ENST00000621016 MYO6Q9UM54 1294 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 POTEMA6NI47 508 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 C21orf2O43822 256 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 RNF40O75150 1001 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 UFL1O94874 794 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 SLC16A2P36021 539 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 SCNN1BP51168 640 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 C12orf60Q5U649 245 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 ANKRD40Q6AI12 368 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 MB21D1Q8N884 522 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 TBCKQ8TEA7 893 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 ARHGEF1Q92888 912 aaKnown RBP11.85□□□□□ -0.51
CDH1-214ENST00000621016 CRACR2AQ9BSW2 395 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 LACRTQ9GZZ8 138 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 ZNHIT6Q9NWK9 470 aaKnown RBP11.85□□□□□ -0.51
CDH1-214ENST00000621016 MAD2L2Q9UI95 211 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 RTCBQ9Y3I0 505 aaKnown RBP11.85□□□□□ -0.51
CDH1-214ENST00000621016 CHUKO15111 745 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 BAG3O95817 575 aa11.85□□□□□ -0.51
CDH1-214ENST00000621016 FAM163BP0C2L3 166 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms