RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 AIFM3Q96NN9 605 aa22.22■■□□□ 1.15
UPF1-209ENST00000600310 B4DLN1 442 aa22.21■■□□□ 1.15
UPF1-209ENST00000600310 CYBAP13498 195 aa22.21■■□□□ 1.15
UPF1-209ENST00000600310 MTFR1Q15390 333 aa22.21■■□□□ 1.15
UPF1-209ENST00000600310 ARHGEF16Q5VV41 709 aa22.21■■□□□ 1.15
UPF1-209ENST00000600310 SNX21Q969T3 373 aa22.21■■□□□ 1.15
UPF1-209ENST00000600310 IWS1Q96ST2 819 aa22.21■■□□□ 1.15
UPF1-209ENST00000600310 MPHOSPH6Q99547 160 aaKnown RBP22.21■■□□□ 1.15
UPF1-209ENST00000600310 C6orf50Q9HD87 102 aa22.21■■□□□ 1.15
UPF1-209ENST00000600310 HMX1Q9NP08 348 aaPredicted RBP22.21■■□□□ 1.15
UPF1-209ENST00000600310 PXMP2Q9NR77 195 aa22.21■■□□□ 1.15
UPF1-209ENST00000600310 CNPY2Q9Y2B0 182 aa22.21■■□□□ 1.15
UPF1-209ENST00000600310 RPTORQ8N122 1335 aa22.21■■□□□ 1.15
UPF1-209ENST00000600310 PLXNA1Q9UIW2 1896 aa22.2■■□□□ 1.14
UPF1-209ENST00000600310 GNA11P29992 359 aa22.2■■□□□ 1.14
UPF1-209ENST00000600310 NLRP5P59047 1200 aa22.2■■□□□ 1.14
UPF1-209ENST00000600310 HMGN5P82970 282 aaKnown RBP22.2■■□□□ 1.14
UPF1-209ENST00000600310 UBE2SQ16763 222 aa22.2■■□□□ 1.14
UPF1-209ENST00000600310 PRAMEF19Q5SWL8 479 aa22.2■■□□□ 1.14
UPF1-209ENST00000600310 TRPV1Q8NER1 839 aa22.2■■□□□ 1.14
UPF1-209ENST00000600310 ALG1Q9BT22 464 aa22.2■■□□□ 1.14
UPF1-209ENST00000600310 KATNBL1Q9H079 304 aa22.2■■□□□ 1.14
UPF1-209ENST00000600310 UNC93B1Q9H1C4 597 aa22.2■■□□□ 1.14
UPF1-209ENST00000600310 ABHD16BQ9H3Z7 469 aa22.2■■□□□ 1.14
UPF1-209ENST00000600310 DDX49Q9Y6V7 483 aaKnown RBP22.2■■□□□ 1.14
UPF1-209ENST00000600310 RBBP6Q7Z6E9 1792 aaKnown RBP22.2■■□□□ 1.14
UPF1-209ENST00000600310 LCTP09848 1927 aa22.19■■□□□ 1.14
UPF1-209ENST00000600310 ZNF865P0CJ78 1059 aaPredicted RBP22.19■■□□□ 1.14
UPF1-209ENST00000600310 CCL5P13501 91 aa22.19■■□□□ 1.14
UPF1-209ENST00000600310 XBP1P17861 261 aa22.19■■□□□ 1.14
UPF1-209ENST00000600310 CCND3P30281 292 aaPredicted RBP22.19■■□□□ 1.14
UPF1-209ENST00000600310 PDCD2LQ9BRP1 358 aa22.19■■□□□ 1.14
UPF1-209ENST00000600310 FRMPD4Q14CM0 1322 aa22.19■■□□□ 1.14
UPF1-209ENST00000600310 MYCP01106 439 aaPredicted RBP22.18■■□□□ 1.14
UPF1-209ENST00000600310 NR3C2P08235 984 aa22.18■■□□□ 1.14
UPF1-209ENST00000600310 EIF2AK2P19525 551 aaKnown RBP22.18■■□□□ 1.14
UPF1-209ENST00000600310 CLK2P49760 499 aaKnown RBP22.18■■□□□ 1.14
UPF1-209ENST00000600310 PDE4DQ08499 809 aa22.18■■□□□ 1.14
UPF1-209ENST00000600310 ACVR2BQ13705 512 aa22.18■■□□□ 1.14
UPF1-209ENST00000600310 GALNT17Q6IS24 598 aa22.18■■□□□ 1.14
UPF1-209ENST00000600310 BICD2Q8TD16 824 aa22.18■■□□□ 1.14
UPF1-209ENST00000600310 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.18■■□□□ 1.14
UPF1-209ENST00000600310 PAK6Q9NQU5 681 aaPredicted RBP22.18■■□□□ 1.14
UPF1-209ENST00000600310 PCDHA6Q9UN73 950 aa22.18■■□□□ 1.14
UPF1-209ENST00000600310 PCDHA8Q9Y5H6 950 aa22.18■■□□□ 1.14
UPF1-209ENST00000600310 SPDYE3A6NKU9 549 aa22.17■■□□□ 1.14
UPF1-209ENST00000600310 FOSP01100 380 aaPredicted RBP22.17■■□□□ 1.14
UPF1-209ENST00000600310 AP3B2Q13367 1082 aa22.17■■□□□ 1.14
UPF1-209ENST00000600310 CUL4AQ13619 759 aa22.17■■□□□ 1.14
UPF1-209ENST00000600310 PGM5Q15124 567 aa22.17■■□□□ 1.14
UPF1-209ENST00000600310 RNF208Q9H0X6 261 aa22.17■■□□□ 1.14
UPF1-209ENST00000600310 VTA1Q9NP79 307 aa22.17■■□□□ 1.14
UPF1-209ENST00000600310 K7ELQ4 463 aaPredicted RBP22.16■■□□□ 1.14
UPF1-209ENST00000600310 ADAMTS3O15072 1205 aa22.16■■□□□ 1.14
UPF1-209ENST00000600310 STXBP2Q15833 593 aa22.16■■□□□ 1.14
UPF1-209ENST00000600310 MCTP2Q6DN12 878 aa22.16■■□□□ 1.14
UPF1-209ENST00000600310 VSIG10LQ86VR7 867 aa22.16■■□□□ 1.14
UPF1-209ENST00000600310 REXO1Q8N1G1 1221 aaKnown RBP22.16■■□□□ 1.14
UPF1-209ENST00000600310 DAGLBQ8NCG7 672 aa22.16■■□□□ 1.14
UPF1-209ENST00000600310 PHF20Q9BVI0 1012 aa22.16■■□□□ 1.14
UPF1-209ENST00000600310 GJB4Q9NTQ9 266 aa22.16■■□□□ 1.14
UPF1-209ENST00000600310 TMEM260Q9NX78 707 aa22.16■■□□□ 1.14
UPF1-209ENST00000600310 ZHX1Q9UKY1 873 aaPredicted RBP22.16■■□□□ 1.14
UPF1-209ENST00000600310 PCDHA4Q9UN74 947 aa22.16■■□□□ 1.14
UPF1-209ENST00000600310 SEPT4O43236 478 aa22.15■■□□□ 1.14
UPF1-209ENST00000600310 GJB1P08034 283 aa22.15■■□□□ 1.14
UPF1-209ENST00000600310 CNGA1P29973 690 aa22.15■■□□□ 1.14
UPF1-209ENST00000600310 NPY5RQ15761 445 aa22.15■■□□□ 1.14
UPF1-209ENST00000600310 EEPD1Q7L9B9 569 aa22.15■■□□□ 1.14
UPF1-209ENST00000600310 FBXO16Q8IX29 292 aaPredicted RBP22.15■■□□□ 1.14
UPF1-209ENST00000600310 IL31RAQ8NI17 732 aa22.15■■□□□ 1.14
UPF1-209ENST00000600310 TMEM106CQ9BVX2 250 aa22.15■■□□□ 1.14
UPF1-209ENST00000600310 KCNJ14Q9UNX9 436 aa22.15■■□□□ 1.14
UPF1-209ENST00000600310 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.15■■□□□ 1.14
UPF1-209ENST00000600310 MSCO60682 206 aa22.14■■□□□ 1.13
UPF1-209ENST00000600310 EIF3JO75822 258 aaKnown RBP22.14■■□□□ 1.13
UPF1-209ENST00000600310 CCND2P30279 289 aa22.14■■□□□ 1.13
UPF1-209ENST00000600310 JAKMIP3Q5VZ66 844 aa22.14■■□□□ 1.13
UPF1-209ENST00000600310 TAPT1Q6NXT6 567 aa22.14■■□□□ 1.13
UPF1-209ENST00000600310 XRRA1Q6P2D8 792 aa22.14■■□□□ 1.13
UPF1-209ENST00000600310 BLIDQ8IZY5 108 aa22.14■■□□□ 1.13
UPF1-209ENST00000600310 FAM184AQ8NB25 1140 aa22.14■■□□□ 1.13
UPF1-209ENST00000600310 ANO3Q9BYT9 981 aa22.14■■□□□ 1.13
UPF1-209ENST00000600310 EHMT1Q9H9B1 1298 aa22.14■■□□□ 1.13
UPF1-209ENST00000600310 DDX20Q9UHI6 824 aaKnown RBP22.14■■□□□ 1.13
UPF1-209ENST00000600310 FAM184BQ9ULE4 1060 aa22.14■■□□□ 1.13
UPF1-209ENST00000600310 RBM47A0AV96 593 aaKnown RBP22.13■■□□□ 1.13
UPF1-209ENST00000600310 M0R2N6 131 aa22.13■■□□□ 1.13
UPF1-209ENST00000600310 MYCLP12524 364 aaPredicted RBP22.13■■□□□ 1.13
UPF1-209ENST00000600310 AKR1A1P14550 325 aa22.13■■□□□ 1.13
UPF1-209ENST00000600310 CCDC144BQ3MJ40 725 aa22.13■■□□□ 1.13
UPF1-209ENST00000600310 PCNX4Q63HM2 1172 aa22.13■■□□□ 1.13
UPF1-209ENST00000600310 HSCBQ8IWL3 235 aa22.13■■□□□ 1.13
UPF1-209ENST00000600310 RASGRP4Q8TDF6 673 aa22.13■■□□□ 1.13
UPF1-209ENST00000600310 DEFB118Q96PH6 123 aa22.13■■□□□ 1.13
UPF1-209ENST00000600310 STAM2O75886 525 aa22.12■■□□□ 1.13
UPF1-209ENST00000600310 SREBF1P36956 1147 aa22.12■■□□□ 1.13
UPF1-209ENST00000600310 TRIM29Q14134 588 aa22.12■■□□□ 1.13
UPF1-209ENST00000600310 LHX8Q68G74 356 aa22.12■■□□□ 1.13
UPF1-209ENST00000600310 IQSEC1Q6DN90 963 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms