RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 TNFAIP2Q03169 654 aa16.79■□□□□ 0.28
VRK3-206ENST00000594090 RNF180Q86T96 592 aa16.79■□□□□ 0.28
VRK3-206ENST00000594090 GPKOWQ92917 476 aaPredicted RBP eCLIP16.79■□□□□ 0.28
VRK3-206ENST00000594090 ZNF274Q96GC6 653 aaPredicted RBP16.79■□□□□ 0.28
VRK3-206ENST00000594090 IWS1Q96ST2 819 aa16.79■□□□□ 0.28
VRK3-206ENST00000594090 LARP6Q9BRS8 491 aaKnown RBP16.79■□□□□ 0.28
VRK3-206ENST00000594090 WWC2Q6AWC2 1192 aa16.79■□□□□ 0.28
VRK3-206ENST00000594090 IQSEC1Q6DN90 963 aa16.79■□□□□ 0.28
VRK3-206ENST00000594090 UPF3AQ9H1J1 476 aaKnown RBP16.79■□□□□ 0.28
VRK3-206ENST00000594090 NCOA5Q9HCD5 579 aaKnown RBP16.79■□□□□ 0.28
VRK3-206ENST00000594090 GNEQ9Y223 722 aaKnown RBP16.79■□□□□ 0.28
VRK3-206ENST00000594090 GTF3C3Q9Y5Q9 886 aa16.79■□□□□ 0.28
VRK3-206ENST00000594090 V9GY48 417 aaPredicted RBP16.79■□□□□ 0.28
VRK3-206ENST00000594090 RBM47A0AV96 593 aaKnown RBP16.78■□□□□ 0.28
VRK3-206ENST00000594090 MYADML2A6NDP7 307 aa16.78■□□□□ 0.28
VRK3-206ENST00000594090 PIK3CDO00329 1044 aa16.78■□□□□ 0.28
VRK3-206ENST00000594090 SMPD1P17405 629 aa16.78■□□□□ 0.28
VRK3-206ENST00000594090 CCT2P78371 535 aaKnown RBP16.78■□□□□ 0.28
VRK3-206ENST00000594090 NTRK3Q16288 839 aa16.78■□□□□ 0.28
VRK3-206ENST00000594090 NOL8Q76FK4 1167 aaKnown RBP16.78■□□□□ 0.28
VRK3-206ENST00000594090 TLK2Q86UE8 772 aa16.78■□□□□ 0.28
VRK3-206ENST00000594090 FCHSD1Q86WN1 690 aa16.78■□□□□ 0.28
VRK3-206ENST00000594090 KLHDC9Q8NEP7 349 aa16.78■□□□□ 0.28
VRK3-206ENST00000594090 SCFD2Q8WU76 684 aa16.78■□□□□ 0.28
VRK3-206ENST00000594090 CUL5Q93034 780 aa16.78■□□□□ 0.28
VRK3-206ENST00000594090 PDCD2LQ9BRP1 358 aa16.78■□□□□ 0.28
VRK3-206ENST00000594090 SENP6Q9GZR1 1112 aaPredicted RBP16.78■□□□□ 0.28
VRK3-206ENST00000594090 ALDH8A1Q9H2A2 487 aaPredicted RBP16.78■□□□□ 0.28
VRK3-206ENST00000594090 FRMPD4Q14CM0 1322 aa16.77■□□□□ 0.28
VRK3-206ENST00000594090 KIAA1217Q5T5P2 1943 aa16.77■□□□□ 0.28
VRK3-206ENST00000594090 hCG_1984214I3L0E3 225 aa16.77■□□□□ 0.27
VRK3-206ENST00000594090 STXBP3O00186 592 aa16.77■□□□□ 0.27
VRK3-206ENST00000594090 MEIS2O14770 477 aa16.77■□□□□ 0.27
VRK3-206ENST00000594090 PTGS1P23219 599 aa16.77■□□□□ 0.27
VRK3-206ENST00000594090 CST5P28325 142 aaPredicted RBP16.77■□□□□ 0.27
VRK3-206ENST00000594090 GJA9P57773 515 aa16.77■□□□□ 0.27
VRK3-206ENST00000594090 PGM5Q15124 567 aa16.77■□□□□ 0.27
VRK3-206ENST00000594090 STXBP2Q15833 593 aa16.77■□□□□ 0.27
VRK3-206ENST00000594090 TMEM63BQ5T3F8 832 aa16.77■□□□□ 0.27
VRK3-206ENST00000594090 PPP1R18Q6NYC8 613 aa16.77■□□□□ 0.27
VRK3-206ENST00000594090 USP17L6PQ6QN14 398 aa16.77■□□□□ 0.27
VRK3-206ENST00000594090 ZNF713Q8N859 430 aaPredicted RBP16.77■□□□□ 0.27
VRK3-206ENST00000594090 WDR11Q9BZH6 1224 aa16.77■□□□□ 0.27
VRK3-206ENST00000594090 PSTPIP2Q9H939 334 aa16.77■□□□□ 0.27
VRK3-206ENST00000594090 SPC25Q9HBM1 224 aa16.77■□□□□ 0.27
VRK3-206ENST00000594090 NR3C2P08235 984 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 C6orf222P0C671 652 aaPredicted RBP16.76■□□□□ 0.27
VRK3-206ENST00000594090 IFNAR1P17181 557 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 AK2P54819 239 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 NAPAP54920 295 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 NKX3-2P78367 333 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 IRX5P78411 483 aaPredicted RBP16.76■□□□□ 0.27
VRK3-206ENST00000594090 STK3Q13188 491 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 PFKFB3Q16875 520 aaPredicted RBP16.76■□□□□ 0.27
VRK3-206ENST00000594090 DUSP28Q4G0W2 176 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 TYW1BQ6NUM6 668 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 IL31RAQ8NI17 732 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 SMARCC2Q8TAQ2 1214 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 DPF3Q92784 378 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 PHKBQ93100 1093 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 TSEN34Q9BSV6 310 aaKnown RBP16.76■□□□□ 0.27
VRK3-206ENST00000594090 BARHL2Q9NY43 387 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 RBM27Q9P2N5 1060 aaKnown RBP16.76■□□□□ 0.27
VRK3-206ENST00000594090 TPCN1Q9ULQ1 816 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 PHF24Q9UPV7 400 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 Q9Y3F1 56 aa16.76■□□□□ 0.27
VRK3-206ENST00000594090 CTAGE5O15320 804 aa16.75■□□□□ 0.27
VRK3-206ENST00000594090 PRPF3O43395 683 aaKnown RBP16.75■□□□□ 0.27
VRK3-206ENST00000594090 ARIH2O95376 493 aa16.75■□□□□ 0.27
VRK3-206ENST00000594090 SCG2P13521 617 aa16.75■□□□□ 0.27
VRK3-206ENST00000594090 ANKRD1Q15327 319 aa16.75■□□□□ 0.27
VRK3-206ENST00000594090 UBE2SQ16763 222 aa16.75■□□□□ 0.27
VRK3-206ENST00000594090 LRRC26Q2I0M4 334 aa16.75■□□□□ 0.27
VRK3-206ENST00000594090 CCSAPQ6IQ19 270 aaPredicted RBP16.75■□□□□ 0.27
VRK3-206ENST00000594090 RNF26Q9BY78 433 aaPredicted RBP16.75■□□□□ 0.27
VRK3-206ENST00000594090 NKRFO15226 690 aaKnown RBP eCLIP16.74■□□□□ 0.27
VRK3-206ENST00000594090 DYNC1LI2O43237 492 aaPredicted RBP16.74■□□□□ 0.27
VRK3-206ENST00000594090 EIF3JO75822 258 aaKnown RBP16.74■□□□□ 0.27
VRK3-206ENST00000594090 MYCLP12524 364 aaPredicted RBP16.74■□□□□ 0.27
VRK3-206ENST00000594090 CCND2P30279 289 aa16.74■□□□□ 0.27
VRK3-206ENST00000594090 NEK4P51957 841 aa16.74■□□□□ 0.27
VRK3-206ENST00000594090 TTLL4Q14679 1199 aa16.74■□□□□ 0.27
VRK3-206ENST00000594090 KCNA10Q16322 511 aa16.74■□□□□ 0.27
VRK3-206ENST00000594090 PKN1Q16512 942 aa16.74■□□□□ 0.27
VRK3-206ENST00000594090 SEPT14Q6ZU15 432 aa16.74■□□□□ 0.27
VRK3-206ENST00000594090 PCSK9Q8NBP7 692 aaKnown RBP16.74■□□□□ 0.27
VRK3-206ENST00000594090 FERMT2Q96AC1 680 aa16.74■□□□□ 0.27
VRK3-206ENST00000594090 SLC26A6Q9BXS9 759 aa16.74■□□□□ 0.27
VRK3-206ENST00000594090 AP5M1Q9H0R1 490 aa16.74■□□□□ 0.27
VRK3-206ENST00000594090 A0A1W2PQ45 241 aaPredicted RBP16.73■□□□□ 0.27
VRK3-206ENST00000594090 A0A1W2PQY0 241 aa16.73■□□□□ 0.27
VRK3-206ENST00000594090 MOXD2PA6NHM9 499 aa16.73■□□□□ 0.27
VRK3-206ENST00000594090 EVI5O60447 810 aa16.73■□□□□ 0.27
VRK3-206ENST00000594090 PPFIA3O75145 1194 aa16.73■□□□□ 0.27
VRK3-206ENST00000594090 ACLYP53396 1101 aa16.73■□□□□ 0.27
VRK3-206ENST00000594090 ATN1P54259 1190 aaPredicted RBP16.73■□□□□ 0.27
VRK3-206ENST00000594090 BEX3Q00994 111 aa16.73■□□□□ 0.27
VRK3-206ENST00000594090 AKAP17AQ02040 695 aaKnown RBP16.73■□□□□ 0.27
VRK3-206ENST00000594090 FSCN1Q16658 493 aaKnown RBP16.73■□□□□ 0.27
VRK3-206ENST00000594090 GNASQ5JWF2 1037 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms