RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 CSPP1Q1MSJ5 1256 aa11.95□□□□□ -0.5
VPS4B-204ENST00000589604 GPR142Q7Z601 462 aa11.95□□□□□ -0.5
VPS4B-204ENST00000589604 NCAPG2Q86XI2 1143 aa11.95□□□□□ -0.5
VPS4B-204ENST00000589604 CCDC148Q8NFR7 591 aa11.95□□□□□ -0.5
VPS4B-204ENST00000589604 RASGRP4Q8TDF6 673 aa11.95□□□□□ -0.5
VPS4B-204ENST00000589604 GJD2Q9UKL4 321 aa11.95□□□□□ -0.5
VPS4B-204ENST00000589604 LCTP09848 1927 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 SMCO2A6NFE2 343 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 FDX1P10109 184 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 OAZ1P54368 228 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 USH1GQ495M9 461 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 RILPL1Q5EBL4 403 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 CLEC4DQ8WXI8 215 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 CCPG1Q9ULG6 757 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 PCDHB6Q9Y5E3 794 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 BRCA2P51587 3418 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 NFIBO00712 420 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 EDIL3O43854 480 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 MBD3O95983 291 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 ALAS1P13196 640 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 MORN1Q5T089 497 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 AXDND1Q5T1B0 1012 aaPredicted RBP11.94□□□□□ -0.5
VPS4B-204ENST00000589604 WDR78Q5VTH9 848 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 PPP1R18Q6NYC8 613 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 OTOP1Q7RTM1 612 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 SHCBP1Q8NEM2 672 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 CCDC12Q8WUD4 166 aaPredicted RBP11.94□□□□□ -0.5
VPS4B-204ENST00000589604 TBC1D5Q92609 795 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 USP6NLQ92738 828 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 ERO1AQ96HE7 468 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 BRMS1Q9HCU9 246 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.94□□□□□ -0.5
VPS4B-204ENST00000589604 RNF146Q9NTX7 359 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 TMEM63CQ9P1W3 806 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 PCDHA7Q9UN72 937 aa11.94□□□□□ -0.5
VPS4B-204ENST00000589604 ZNFX1Q9P2E3 1918 aaKnown RBP11.93□□□□□ -0.5
VPS4B-204ENST00000589604 TNPO2O14787 897 aaKnown RBP11.93□□□□□ -0.5
VPS4B-204ENST00000589604 SPTLC2O15270 562 aa11.93□□□□□ -0.5
VPS4B-204ENST00000589604 LIG1P18858 919 aa11.93□□□□□ -0.5
VPS4B-204ENST00000589604 PTPREP23469 700 aa11.93□□□□□ -0.5
VPS4B-204ENST00000589604 MAPK4P31152 587 aa11.93□□□□□ -0.5
VPS4B-204ENST00000589604 CLK2P49760 499 aaKnown RBP11.93□□□□□ -0.5
VPS4B-204ENST00000589604 PRKCZQ05513 592 aa11.93□□□□□ -0.5
VPS4B-204ENST00000589604 PIK3AP1Q6ZUJ8 805 aa11.93□□□□□ -0.5
VPS4B-204ENST00000589604 PLEKHH3Q7Z736 793 aa11.93□□□□□ -0.5
VPS4B-204ENST00000589604 FBXO11Q86XK2 927 aa11.93□□□□□ -0.5
VPS4B-204ENST00000589604 TRERF1Q96PN7 1200 aa11.93□□□□□ -0.5
VPS4B-204ENST00000589604 PURBQ96QR8 312 aaKnown RBP11.93□□□□□ -0.5
VPS4B-204ENST00000589604 C6orf50Q9HD87 102 aa11.93□□□□□ -0.5
VPS4B-204ENST00000589604 RIC8AQ9NPQ8 531 aa11.93□□□□□ -0.5
VPS4B-204ENST00000589604 CTDP1Q9Y5B0 961 aaPredicted RBP11.93□□□□□ -0.5
VPS4B-204ENST00000589604 MORC2Q9Y6X9 1032 aaPredicted RBP11.93□□□□□ -0.5
VPS4B-204ENST00000589604 ZNF236Q9UL36 1845 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 COBLO75128 1261 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 PPP6R2O75170 966 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 SLC25A27O95847 323 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 PGK2P07205 417 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 GNA11P29992 359 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 FCGRTP55899 365 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 CCNA1P78396 465 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 GRB14Q14449 540 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 STK38Q15208 465 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 KCNG4Q8TDN1 519 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 MROH8Q9H579 483 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 A1CFQ9NQ94 594 aaKnown RBP11.92□□□□□ -0.5
VPS4B-204ENST00000589604 PRDM10Q9NQV6 1147 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 SSUH2Q9Y2M2 353 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 TRIM17Q9Y577 477 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 PCDHA1Q9Y5I3 950 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 ASTN1O14525 1302 aa11.92□□□□□ -0.5
VPS4B-204ENST00000589604 CAPN15O75808 1086 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 ADORA2AP29274 412 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 MARCKSP29966 332 aaPredicted RBP11.91□□□□□ -0.5
VPS4B-204ENST00000589604 TRAPPC10P48553 1259 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 FLT3LGP49771 235 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 ADCY7P51828 1080 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 ADALQ6DHV7 355 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 CAVIN1Q6NZI2 390 aaKnown RBP11.91□□□□□ -0.5
VPS4B-204ENST00000589604 C4orf32Q8N8J7 132 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 NPLOC4Q8TAT6 608 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 FGD4Q96M96 766 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 AMNQ9BXJ7 453 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 GOLPH3LQ9H4A5 285 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 TMEM260Q9NX78 707 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 BIN2Q9UBW5 565 aaPredicted RBP11.91□□□□□ -0.5
VPS4B-204ENST00000589604 SRRDQ9UH36 339 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 MRVI1Q9Y6F6 885 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 RBBP6Q7Z6E9 1792 aaKnown RBP11.91□□□□□ -0.5
VPS4B-204ENST00000589604 DNAJC25-GNG10A0A024R161 153 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 A0A1W2PQ27 194 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 A0A1W2PQ64 194 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 A0A1W2PQD8 194 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 MEIS2O14770 477 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 ATP2B1P20020 1258 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 CNTN2Q02246 1040 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 KIF22Q14807 665 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 CCL14Q16627 93 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 TTC38Q5R3I4 469 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 SLC30A10Q6XR72 485 aa11.91□□□□□ -0.5
VPS4B-204ENST00000589604 KRT25Q7Z3Z0 450 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms