RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 CMTR1Q8N1G2 835 aaKnown RBP12.56□□□□□ -0.4
CLIP3-203ENST00000586457 OR6J1Q8NGC5 347 aa12.56□□□□□ -0.4
CLIP3-203ENST00000586457 MORC4Q8TE76 937 aa12.56□□□□□ -0.4
CLIP3-203ENST00000586457 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.55□□□□□ -0.4
CLIP3-203ENST00000586457 TLR3O15455 904 aaKnown RBP12.55□□□□□ -0.4
CLIP3-203ENST00000586457 CYTH3O43739 400 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 PQBP1O60828 265 aaKnown RBP12.55□□□□□ -0.4
CLIP3-203ENST00000586457 ADAMTS4O75173 837 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 CABYRO75952 493 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 PLEKHA8P1O95397 391 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 CCND2P30279 289 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 METAP2P50579 478 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLIP3-203ENST00000586457 BEX3Q00994 111 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 DUSP28Q4G0W2 176 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 TAPT1Q6NXT6 567 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 APOA5Q6Q788 366 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 HEATR3Q7Z4Q2 680 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 SRBD1Q8N5C6 995 aaKnown RBP12.55□□□□□ -0.4
CLIP3-203ENST00000586457 KLHDC9Q8NEP7 349 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 BRF1Q92994 677 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 PSTPIP2Q9H939 334 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 PXMP2Q9NR77 195 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 COLQQ9Y215 455 aaPredicted RBP12.55□□□□□ -0.4
CLIP3-203ENST00000586457 DDX49Q9Y6V7 483 aaKnown RBP12.55□□□□□ -0.4
CLIP3-203ENST00000586457 MROH7Q68CQ1 1323 aa12.55□□□□□ -0.4
CLIP3-203ENST00000586457 MYH6P13533 1939 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 KPNA6O60684 536 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 PPP1R11O60927 126 aaPredicted RBP12.54□□□□□ -0.4
CLIP3-203ENST00000586457 NR3C2P08235 984 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 MYL3P08590 195 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 CPA1P15085 419 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 RPS6KB1P23443 525 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 CST5P28325 142 aaPredicted RBP12.54□□□□□ -0.4
CLIP3-203ENST00000586457 HSD17B4P51659 736 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 CHMP4BP1P59074 171 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 APOBRQ0VD83 1088 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 TRIM60Q495X7 471 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 KCNV1Q6PIU1 500 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 TMTC3Q6ZXV5 915 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 RUFY3Q7L099 469 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 USP26Q9BXU7 913 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 KATNBL1Q9H079 304 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 UPF3AQ9H1J1 476 aaKnown RBP12.54□□□□□ -0.4
CLIP3-203ENST00000586457 EHMT1Q9H9B1 1298 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 POLR3EQ9NVU0 708 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 MRVI1Q9Y6F6 885 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 ASTN1O14525 1302 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 ELP1O95163 1332 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 BRCA2P51587 3418 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 SMCHD1A6NHR9 2005 aa12.54□□□□□ -0.4
CLIP3-203ENST00000586457 A0A0U1RQG5 324 aaPredicted RBP12.53□□□□□ -0.4
CLIP3-203ENST00000586457 hCG_1642624A0A1W2PR95 340 aa12.53□□□□□ -0.4
CLIP3-203ENST00000586457 SPDYE3A6NKU9 549 aa12.53□□□□□ -0.4
CLIP3-203ENST00000586457 NAPAP54920 295 aa12.53□□□□□ -0.4
CLIP3-203ENST00000586457 TLE2Q04725 743 aa12.53□□□□□ -0.4
CLIP3-203ENST00000586457 GNPTABQ3T906 1256 aa12.53□□□□□ -0.4
CLIP3-203ENST00000586457 C1orf53Q5VUE5 145 aa12.53□□□□□ -0.4
CLIP3-203ENST00000586457 KCNB2Q92953 911 aa12.53□□□□□ -0.4
CLIP3-203ENST00000586457 SEZ6LQ9BYH1 1024 aa12.53□□□□□ -0.4
CLIP3-203ENST00000586457 UBE2OQ9C0C9 1292 aaKnown RBP12.53□□□□□ -0.4
CLIP3-203ENST00000586457 TMEM39AQ9NV64 488 aa12.53□□□□□ -0.4
CLIP3-203ENST00000586457 BRPF3Q9ULD4 1205 aa12.53□□□□□ -0.4
CLIP3-203ENST00000586457 GNEQ9Y223 722 aaKnown RBP12.53□□□□□ -0.4
CLIP3-203ENST00000586457 V9GY48 417 aaPredicted RBP12.53□□□□□ -0.4
CLIP3-203ENST00000586457 RBM47A0AV96 593 aaKnown RBP12.52□□□□□ -0.41
CLIP3-203ENST00000586457 MYADML2A6NDP7 307 aa12.52□□□□□ -0.41
CLIP3-203ENST00000586457 CPLX1O14810 134 aa12.52□□□□□ -0.41
CLIP3-203ENST00000586457 ADCY6O43306 1168 aa12.52□□□□□ -0.41
CLIP3-203ENST00000586457 GH1P01241 217 aa12.52□□□□□ -0.41
CLIP3-203ENST00000586457 CLTBP09497 229 aa12.52□□□□□ -0.41
CLIP3-203ENST00000586457 RAG1P15918 1043 aa12.52□□□□□ -0.41
CLIP3-203ENST00000586457 EDNRBP24530 442 aa12.52□□□□□ -0.41
CLIP3-203ENST00000586457 RCAN1P53805 252 aa12.52□□□□□ -0.41
CLIP3-203ENST00000586457 MDM2Q00987 491 aaPredicted RBP12.52□□□□□ -0.41
CLIP3-203ENST00000586457 HABP4Q5JVS0 413 aaKnown RBP12.52□□□□□ -0.41
CLIP3-203ENST00000586457 CPLX2Q6PUV4 134 aaKnown RBP12.52□□□□□ -0.41
CLIP3-203ENST00000586457 CXCL17Q6UXB2 119 aa12.52□□□□□ -0.41
CLIP3-203ENST00000586457 DHX37Q8IY37 1157 aaKnown RBP12.52□□□□□ -0.41
CLIP3-203ENST00000586457 GLT8D2Q9H1C3 349 aa12.52□□□□□ -0.41
CLIP3-203ENST00000586457 COL20A1Q9P218 1284 aa12.52□□□□□ -0.41
CLIP3-203ENST00000586457 RBM27Q9P2N5 1060 aaKnown RBP12.52□□□□□ -0.41
CLIP3-203ENST00000586457 FRMPD3Q5JV73 1810 aa12.52□□□□□ -0.41
CLIP3-203ENST00000586457 MCM3APO60318 1980 aa12.51□□□□□ -0.41
CLIP3-203ENST00000586457 ARVCFO00192 962 aa12.51□□□□□ -0.41
CLIP3-203ENST00000586457 STAM2O75886 525 aa12.51□□□□□ -0.41
CLIP3-203ENST00000586457 MAGEA10P43363 369 aaPredicted RBP12.51□□□□□ -0.41
CLIP3-203ENST00000586457 LAMC2Q13753 1193 aa12.51□□□□□ -0.41
CLIP3-203ENST00000586457 PGM5Q15124 567 aa12.51□□□□□ -0.41
CLIP3-203ENST00000586457 LY6KQ17RY6 165 aa12.51□□□□□ -0.41
CLIP3-203ENST00000586457 NLRX1Q86UT6 975 aa12.51□□□□□ -0.41
CLIP3-203ENST00000586457 VSIG10LQ86VR7 867 aa12.51□□□□□ -0.41
CLIP3-203ENST00000586457 CCDC12Q8WUD4 166 aaPredicted RBP12.51□□□□□ -0.41
CLIP3-203ENST00000586457 TOX2Q96NM4 488 aa12.51□□□□□ -0.41
CLIP3-203ENST00000586457 PDCD2LQ9BRP1 358 aa12.51□□□□□ -0.41
CLIP3-203ENST00000586457 MTG1Q9BT17 334 aaPredicted RBP12.51□□□□□ -0.41
CLIP3-203ENST00000586457 TM6SF1Q9BZW5 370 aa12.51□□□□□ -0.41
CLIP3-203ENST00000586457 MLXIPQ9HAP2 919 aa12.51□□□□□ -0.41
CLIP3-203ENST00000586457 ZSWIM6Q9HCJ5 1215 aa12.51□□□□□ -0.41
CLIP3-203ENST00000586457 PDRG1Q9NUG6 133 aa12.51□□□□□ -0.41
CLIP3-203ENST00000586457 MKI67P46013 3256 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms