RNA–Protein interactions for RNA: ENST00000582114.5

CDK5RAP3-223, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 2

Gene CDK5RAP3, Length 647 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-223	ENST00000582114	MSRA	Q9UJ68	235 aa		13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	PNMA2	Q9UL42	364 aa		13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	GBF1	Q92538	1859 aa		13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	LOC102724159	A0A0B4J2E5	919 aa		13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	MYOG	P15173	224 aa		13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	PWP2	Q15269	919 aa	Known RBP	13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	IMMT	Q16891	758 aa	Known RBP	13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	QRICH1	Q2TAL8	776 aa		13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	SEPT14	Q6ZU15	432 aa		13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	DNER	Q8NFT8	737 aa		13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	SCFD2	Q8WU76	684 aa		13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	TAAR1	Q96RJ0	339 aa		13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	GAS2L1	Q99501	681 aa	Predicted RBP	13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	DSCC1	Q9BVC3	393 aa		13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	MTIF3	Q9H2K0	278 aa	Known RBP	13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	COL20A1	Q9P218	1284 aa		13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	YBX2	Q9Y2T7	364 aa	Known RBP	13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	RAD50	Q92878	1312 aa		13.6	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	RBAK-RBAKDN	I3L0D1	243 aa		13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	HIP1	O00291	1037 aa		13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	NKRF	O15226	690 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	PARP1	P09874	1014 aa	Known RBP	13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	IGFBP4	P22692	258 aa		13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	TTLL4	Q14679	1199 aa		13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	LY6K	Q17RY6	165 aa		13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	BRDT	Q58F21	947 aa	Predicted RBP	13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	CCDC178	Q5BJE1	867 aa		13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	CHST3	Q7LGC8	479 aa		13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	STAG2	Q8N3U4	1231 aa		13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	VWCE	Q96DN2	955 aa		13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	UBAC1	Q9BSL1	405 aa		13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	SEZ6L	Q9BYH1	1024 aa		13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	SCN5A	Q14524	2016 aa		13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	ABCB11	O95342	1321 aa		13.59	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114		B4DLN1	442 aa		13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	SUPT20HL2	P0C7V6	817 aa		13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	EIF2AK2	P19525	551 aa	Known RBP	13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	MRPL12	P52815	198 aa	Known RBP	13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	RAB30	Q15771	203 aa		13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	CCDC85B	Q15834	202 aa	Predicted RBP	13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	ASPRV1	Q53RT3	343 aa		13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	FBXO11	Q86XK2	927 aa		13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	RPUSD2	Q8IZ73	545 aa	Known RBP	13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	AFG1L	Q8WV93	481 aa		13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	ANKS1A	Q92625	1134 aa		13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	RMDN3	Q96TC7	470 aa		13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	KRT23	Q9C075	422 aa		13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	SLC28A3	Q9HAS3	691 aa		13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	CTNNA3	Q9UI47	895 aa		13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	SLC4A7	Q9Y6M7	1214 aa		13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	SCN10A	Q9Y5Y9	1956 aa		13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.58	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	CHD9	Q3L8U1	2897 aa		13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	MYH6	P13533	1939 aa		13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	MYO9B	Q13459	2157 aa		13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114		A6NJR5	290 aa		13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	SORBS3	O60504	671 aa		13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	CFB	P00751	764 aa		13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	GSPT1	P15170	499 aa	Known RBP	13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	PDE4A	P27815	886 aa		13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	ADGRE1	Q14246	886 aa		13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	IFIT1B	Q5T764	474 aa	Known RBP	13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	ARHGEF16	Q5VV41	709 aa		13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	CYB5R4	Q7L1T6	521 aa		13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	RGS22	Q8NE09	1264 aa		13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	NSUN6	Q8TEA1	469 aa	Known RBP	13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	JMJD4	Q9H9V9	463 aa		13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	NOD1	Q9Y239	953 aa		13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	MRPL11	Q9Y3B7	192 aa	Known RBP	13.57	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	MMP3	P08254	477 aa		13.56	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	ATP2A2	P16615	1042 aa	Known RBP	13.56	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	IRX6	P78412	446 aa	Predicted RBP	13.56	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	STXBP2	Q15833	593 aa		13.56	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	PPP2R2D	Q66LE6	453 aa		13.56	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	NFRKB	Q6P4R8	1299 aa		13.56	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	CCDC62	Q6P9F0	684 aa		13.56	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	MCF2L2	Q86YR7	1114 aa		13.56	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	CNNM2	Q9H8M5	875 aa		13.56	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	CHD7	Q9P2D1	2997 aa		13.55	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	KPNA6	O60684	536 aa		13.55	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	PPP1R11	O60927	126 aa	Predicted RBP	13.55	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	GH1	P01241	217 aa		13.55	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	IQCF3	P0C7M6	154 aa		13.55	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	ARHGAP1	Q07960	439 aa		13.55	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	HOMER1	Q86YM7	354 aa		13.55	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	MICALL1	Q8N3F8	863 aa		13.55	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	RETREG2	Q8NC44	543 aa		13.55	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	ZFP91	Q96JP5	570 aa	Predicted RBP	13.55	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	CERS4	Q9HA82	394 aa		13.55	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.55	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	KLRF2	D3W0D1	207 aa		13.54	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	OPLAH	O14841	1288 aa		13.54	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	MYCL	P12524	364 aa	Predicted RBP	13.54	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	HOXA13	P31271	388 aa	Predicted RBP	13.54	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	NT5C2	P49902	561 aa		13.54	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	PTH1R	Q03431	593 aa		13.54	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	SEC23A	Q15436	765 aa		13.54	□□□□□ -0.24
CDK5RAP3-223	ENST00000582114	PTGIS	Q16647	500 aa		13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms