RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CYP39A1Q9NYL5 469 aa28.55■■■□□ 2.16
SHMT1-207ENST00000580002 PPP6R2O75170 966 aa28.55■■■□□ 2.16
SHMT1-207ENST00000580002 LIG1P18858 919 aa28.55■■■□□ 2.16
SHMT1-207ENST00000580002 APLP1P51693 650 aa28.55■■■□□ 2.16
SHMT1-207ENST00000580002 IFNL1Q8IU54 200 aa28.55■■■□□ 2.16
SHMT1-207ENST00000580002 HHIPL1Q96JK4 782 aa28.55■■■□□ 2.16
SHMT1-207ENST00000580002 GOLPH3LQ9H4A5 285 aa28.55■■■□□ 2.16
SHMT1-207ENST00000580002 EFCC1Q9HA90 598 aa28.55■■■□□ 2.16
SHMT1-207ENST00000580002 CHST13Q8NET6 341 aa28.54■■■□□ 2.16
SHMT1-207ENST00000580002 FAM86B1E9PN63 330 aa28.53■■■□□ 2.16
SHMT1-207ENST00000580002 FAM86B2P0C5J1 330 aa28.53■■■□□ 2.16
SHMT1-207ENST00000580002 PTPREP23469 700 aa28.53■■■□□ 2.16
SHMT1-207ENST00000580002 CEP131Q9UPN4 1083 aa28.53■■■□□ 2.16
SHMT1-207ENST00000580002 ECM2O94769 699 aaPredicted RBP28.52■■■□□ 2.16
SHMT1-207ENST00000580002 EIF2AK2P19525 551 aaKnown RBP28.52■■■□□ 2.16
SHMT1-207ENST00000580002 CNTN2Q02246 1040 aa28.52■■■□□ 2.16
SHMT1-207ENST00000580002 DEFB115Q30KQ5 88 aa28.52■■■□□ 2.16
SHMT1-207ENST00000580002 SHC4Q6S5L8 630 aa28.52■■■□□ 2.16
SHMT1-207ENST00000580002 CREBZFQ9NS37 354 aa28.52■■■□□ 2.16
SHMT1-207ENST00000580002 CPA4Q9UI42 421 aa28.52■■■□□ 2.16
SHMT1-207ENST00000580002 USP11P51784 963 aa28.52■■■□□ 2.16
SHMT1-207ENST00000580002 ADALQ6DHV7 355 aa28.52■■■□□ 2.16
SHMT1-207ENST00000580002 USP49Q70CQ1 688 aa28.52■■■□□ 2.16
SHMT1-207ENST00000580002 CCAR1Q8IX12 1150 aaKnown RBP28.52■■■□□ 2.16
SHMT1-207ENST00000580002 GPRC5AQ8NFJ5 357 aa28.52■■■□□ 2.16
SHMT1-207ENST00000580002 PARK7Q99497 189 aaKnown RBP28.52■■■□□ 2.16
SHMT1-207ENST00000580002 SRPRBQ9Y5M8 271 aaKnown RBP28.52■■■□□ 2.16
SHMT1-207ENST00000580002 RPTORQ8N122 1335 aa28.51■■■□□ 2.15
SHMT1-207ENST00000580002 GOLGA6L4A6NEF3 574 aa28.51■■■□□ 2.15
SHMT1-207ENST00000580002 WDR78Q5VTH9 848 aa28.51■■■□□ 2.15
SHMT1-207ENST00000580002 MCTP2Q6DN12 878 aa28.51■■■□□ 2.15
SHMT1-207ENST00000580002 PPP4R3AQ6IN85 833 aa28.51■■■□□ 2.15
SHMT1-207ENST00000580002 ANKRD35Q8N283 1001 aa28.51■■■□□ 2.15
SHMT1-207ENST00000580002 KRI1Q8N9T8 703 aaKnown RBP28.51■■■□□ 2.15
SHMT1-207ENST00000580002 CSRNP2Q9H175 543 aa28.51■■■□□ 2.15
SHMT1-207ENST00000580002 DDX25Q9UHL0 483 aaKnown RBP28.51■■■□□ 2.15
SHMT1-207ENST00000580002 NEMFO60524 1076 aa28.5■■■□□ 2.15
SHMT1-207ENST00000580002 TAF1CQ15572 869 aaPredicted RBP28.5■■■□□ 2.15
SHMT1-207ENST00000580002 CAPNS2Q96L46 248 aa28.5■■■□□ 2.15
SHMT1-207ENST00000580002 RMDN3Q96TC7 470 aa28.5■■■□□ 2.15
SHMT1-207ENST00000580002 ASTN1O14525 1302 aa28.5■■■□□ 2.15
SHMT1-207ENST00000580002 A0A1B0GVL5 298 aa28.5■■■□□ 2.15
SHMT1-207ENST00000580002 VWA3AA6NCI4 1184 aa28.5■■■□□ 2.15
SHMT1-207ENST00000580002 RASSF10A6NK89 507 aa28.5■■■□□ 2.15
SHMT1-207ENST00000580002 CYP3A4P08684 503 aa28.5■■■□□ 2.15
SHMT1-207ENST00000580002 PRR16Q569H4 304 aa28.5■■■□□ 2.15
SHMT1-207ENST00000580002 LENG9Q96B70 501 aa28.5■■■□□ 2.15
SHMT1-207ENST00000580002 CYP3A7-CYP3A51PA0A087WV96 503 aa28.49■■■□□ 2.15
SHMT1-207ENST00000580002 SLC25A27O95847 323 aa28.49■■■□□ 2.15
SHMT1-207ENST00000580002 PGK2P07205 417 aa28.49■■■□□ 2.15
SHMT1-207ENST00000580002 CYP3A7P24462 503 aa28.49■■■□□ 2.15
SHMT1-207ENST00000580002 HAS1Q92839 578 aa28.49■■■□□ 2.15
SHMT1-207ENST00000580002 MBOAT7Q96N66 472 aa28.49■■■□□ 2.15
SHMT1-207ENST00000580002 MTMR9Q96QG7 549 aa28.49■■■□□ 2.15
SHMT1-207ENST00000580002 PXMP2Q9NR77 195 aa28.49■■■□□ 2.15
SHMT1-207ENST00000580002 MAP3K20Q9NYL2 800 aaKnown RBP28.49■■■□□ 2.15
SHMT1-207ENST00000580002 MORF4L1Q9UBU8 362 aa28.49■■■□□ 2.15
SHMT1-207ENST00000580002 ADGRA2Q96PE1 1338 aa28.48■■■□□ 2.15
SHMT1-207ENST00000580002 CUTAO60888 179 aa28.48■■■□□ 2.15
SHMT1-207ENST00000580002 TM4SF4P48230 202 aa28.48■■■□□ 2.15
SHMT1-207ENST00000580002 GCLCP48506 637 aaPredicted RBP28.48■■■□□ 2.15
SHMT1-207ENST00000580002 FSIP1Q8NA03 581 aa28.48■■■□□ 2.15
SHMT1-207ENST00000580002 BMP15O95972 392 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 CDC25AP30304 524 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 CIITAP33076 1130 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 INHBEP58166 350 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 MRPS9P82933 396 aaKnown RBP28.47■■■□□ 2.15
SHMT1-207ENST00000580002 PGM5Q15124 567 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 TEX2Q8IWB9 1127 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 SAMD3Q8N6K7 520 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 JMYQ8N9B5 988 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 PDCD2LQ9BRP1 358 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 FBXO40Q9UH90 709 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 IGLV3-22A0A075B6J6 115 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 OR52Z1P0C646 297 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 ZNF76P36508 570 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 CALCRLQ16602 461 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 ARHGEF16Q5VV41 709 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 GTF3C2Q8WUA4 911 aaPredicted RBP28.47■■■□□ 2.15
SHMT1-207ENST00000580002 EPSTI1Q96J88 318 aa28.47■■■□□ 2.15
SHMT1-207ENST00000580002 PCNTO95613 3336 aa28.46■■■□□ 2.15
SHMT1-207ENST00000580002 RBBP6Q7Z6E9 1792 aaKnown RBP28.46■■■□□ 2.15
SHMT1-207ENST00000580002 NR1I2O75469 434 aa28.46■■■□□ 2.15
SHMT1-207ENST00000580002 MYCLP12524 364 aaPredicted RBP28.46■■■□□ 2.15
SHMT1-207ENST00000580002 TXKP42681 527 aa28.46■■■□□ 2.15
SHMT1-207ENST00000580002 NDUFA8P51970 172 aa28.46■■■□□ 2.15
SHMT1-207ENST00000580002 KLHL40Q2TBA0 621 aa28.46■■■□□ 2.15
SHMT1-207ENST00000580002 MORC2Q9Y6X9 1032 aaPredicted RBP28.46■■■□□ 2.15
SHMT1-207ENST00000580002 FRMPD4Q14CM0 1322 aa28.46■■■□□ 2.15
SHMT1-207ENST00000580002 LCTP09848 1927 aa28.46■■■□□ 2.15
SHMT1-207ENST00000580002 A0A1W2PQ27 194 aa28.45■■■□□ 2.15
SHMT1-207ENST00000580002 A0A1W2PQ64 194 aa28.45■■■□□ 2.15
SHMT1-207ENST00000580002 A0A1W2PQD8 194 aa28.45■■■□□ 2.15
SHMT1-207ENST00000580002 SOWAHBA6NEL2 793 aa28.45■■■□□ 2.15
SHMT1-207ENST00000580002 PP2D1A8MPX8 630 aa28.45■■■□□ 2.15
SHMT1-207ENST00000580002 ITGB5P18084 799 aa28.45■■■□□ 2.15
SHMT1-207ENST00000580002 PTMSP20962 102 aa28.45■■■□□ 2.15
SHMT1-207ENST00000580002 SREBF2Q12772 1141 aa28.45■■■□□ 2.15
SHMT1-207ENST00000580002 TMEM63CQ9P1W3 806 aa28.45■■■□□ 2.15
SHMT1-207ENST00000580002 BCRP11274 1271 aa28.45■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms