RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 ADCY3O60266 1144 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 ELNP15502 786 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 CLK2P49760 499 aaKnown RBP9.82□□□□□ -0.84
NUP88-211ENST00000575976 ALDH5A1P51649 535 aaPredicted RBP9.82□□□□□ -0.84
NUP88-211ENST00000575976 TRIM29Q14134 588 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 BECN1Q14457 450 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 ARHGEF16Q5VV41 709 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 JAKMIP3Q5VZ66 844 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 KRT40Q6A162 431 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 ZNF467Q7Z7K2 595 aaPredicted RBP9.82□□□□□ -0.84
NUP88-211ENST00000575976 BLIDQ8IZY5 108 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 FAM177A1Q8N128 213 aaPredicted RBP9.82□□□□□ -0.84
NUP88-211ENST00000575976 RASGRP4Q8TDF6 673 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 TRIB2Q92519 343 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 PGBD1Q96JS3 809 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 C8orf76Q96K31 380 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 RMDN3Q96TC7 470 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 GLT8D2Q9H1C3 349 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 ADD3Q9UEY8 706 aaKnown RBP9.82□□□□□ -0.84
NUP88-211ENST00000575976 PCDHA6Q9UN73 950 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 PCDHA4Q9UN74 947 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 PCDHA8Q9Y5H6 950 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 DDX49Q9Y6V7 483 aaKnown RBP9.82□□□□□ -0.84
NUP88-211ENST00000575976 A0A0C4DFX4 3053 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 ZNF236Q9UL36 1845 aa9.82□□□□□ -0.84
NUP88-211ENST00000575976 M0R2N6 131 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 IGHA2P01877 340 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 MMP1P03956 469 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 HSP90AA1P07900 732 aaKnown RBP9.81□□□□□ -0.84
NUP88-211ENST00000575976 EIF2AK2P19525 551 aaKnown RBP9.81□□□□□ -0.84
NUP88-211ENST00000575976 GRK4P32298 578 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 CYP2C19P33261 490 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 UBXN2AP68543 259 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 TRIM32Q13049 653 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 OLFML2BQ68BL8 750 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 GALNT17Q6IS24 598 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 MAMDC4Q6UXC1 1216 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 DAGLBQ8NCG7 672 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 DNERQ8NFT8 737 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 FBXO18Q8NFZ0 1043 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 BICD2Q8TD16 824 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 OXER1Q8TDS5 423 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 PXYLP1Q8TE99 480 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 NSUN6Q8TEA1 469 aaKnown RBP9.81□□□□□ -0.84
NUP88-211ENST00000575976 PDCD2LQ9BRP1 358 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 TINF2Q9BSI4 451 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 ANO3Q9BYT9 981 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 PXMP2Q9NR77 195 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 KIF3AQ9Y496 699 aa9.81□□□□□ -0.84
NUP88-211ENST00000575976 ZNFX1Q9P2E3 1918 aaKnown RBP9.81□□□□□ -0.84
NUP88-211ENST00000575976 ASB14A6NK59 587 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 SPDYE3A6NKU9 549 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 BTBD18B2RXH4 712 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 SNAI1O95863 264 aaPredicted RBP9.8□□□□□ -0.84
NUP88-211ENST00000575976 FOSP01100 380 aaPredicted RBP9.8□□□□□ -0.84
NUP88-211ENST00000575976 NR3C2P08235 984 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 EDNRBP24530 442 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 KRT2P35908 639 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 NR5A1Q13285 461 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 AP3B2Q13367 1082 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 PGM5Q15124 567 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 PRAMEF19Q5SWL8 479 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 MFSD14CQ5VZR4 134 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 LARP1BQ659C4 914 aaKnown RBP9.8□□□□□ -0.84
NUP88-211ENST00000575976 ARMCX2Q7L311 632 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 TEX2Q8IWB9 1127 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 DIS3L2Q8IYB7 885 aaKnown RBP9.8□□□□□ -0.84
NUP88-211ENST00000575976 TRMT44Q8IYL2 757 aaKnown RBP9.8□□□□□ -0.84
NUP88-211ENST00000575976 REXO1Q8N1G1 1221 aaKnown RBP9.8□□□□□ -0.84
NUP88-211ENST00000575976 MSL3Q8N5Y2 521 aaKnown RBP9.8□□□□□ -0.84
NUP88-211ENST00000575976 SLAIN1Q8ND83 568 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 IL31RAQ8NI17 732 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 MORC4Q8TE76 937 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 SH3TC2Q8TF17 1288 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 ZFP91Q96JP5 570 aaPredicted RBP9.8□□□□□ -0.84
NUP88-211ENST00000575976 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.8□□□□□ -0.84
NUP88-211ENST00000575976 RBM19Q9Y4C8 960 aaKnown RBP9.8□□□□□ -0.84
NUP88-211ENST00000575976 FRMPD4Q14CM0 1322 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 RPTORQ8N122 1335 aa9.8□□□□□ -0.84
NUP88-211ENST00000575976 RBBP6Q7Z6E9 1792 aaKnown RBP9.79□□□□□ -0.84
NUP88-211ENST00000575976 LOC102724159A0A0B4J2E5 919 aa9.79□□□□□ -0.84
NUP88-211ENST00000575976 H3BQV1 296 aa9.79□□□□□ -0.84
NUP88-211ENST00000575976 HMGCRP04035 888 aa9.79□□□□□ -0.84
NUP88-211ENST00000575976 INHAP05111 366 aa9.79□□□□□ -0.84
NUP88-211ENST00000575976 MYCLP12524 364 aaPredicted RBP9.79□□□□□ -0.84
NUP88-211ENST00000575976 ANP32AP39687 249 aaKnown RBP9.79□□□□□ -0.84
NUP88-211ENST00000575976 PDE4DQ08499 809 aa9.79□□□□□ -0.84
NUP88-211ENST00000575976 PWP2Q15269 919 aaKnown RBP9.79□□□□□ -0.84
NUP88-211ENST00000575976 SAFBQ15424 915 aaKnown RBP eCLIP9.79□□□□□ -0.84
NUP88-211ENST00000575976 EARS2Q5JPH6 523 aaKnown RBP9.79□□□□□ -0.84
NUP88-211ENST00000575976 MCTP2Q6DN12 878 aa9.79□□□□□ -0.84
NUP88-211ENST00000575976 EEPD1Q7L9B9 569 aa9.79□□□□□ -0.84
NUP88-211ENST00000575976 VSIG10LQ86VR7 867 aa9.79□□□□□ -0.84
NUP88-211ENST00000575976 TNFRSF25Q93038 417 aa9.79□□□□□ -0.84
NUP88-211ENST00000575976 IWS1Q96ST2 819 aa9.79□□□□□ -0.84
NUP88-211ENST00000575976 BRMS1Q9HCU9 246 aa9.79□□□□□ -0.84
NUP88-211ENST00000575976 LCTP09848 1927 aa9.79□□□□□ -0.84
NUP88-211ENST00000575976 SYNGAP1Q96PV0 1343 aa9.79□□□□□ -0.84
NUP88-211ENST00000575976 B4DLN1 442 aa9.78□□□□□ -0.84
NUP88-211ENST00000575976 KIF28PB7ZC32 967 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms