RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 B4DLN1 442 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 ZNF865P0CJ78 1059 aaPredicted RBP9.43□□□□□ -0.9
VPS53-214ENST00000572607 COL6A1P12109 1028 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 CALML3P27482 149 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 MCM5P33992 734 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 MAGEA10P43363 369 aaPredicted RBP9.43□□□□□ -0.9
VPS53-214ENST00000572607 MRPL12P52815 198 aaKnown RBP9.43□□□□□ -0.9
VPS53-214ENST00000572607 CNTN2Q02246 1040 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 TRAF1Q13077 416 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 ACVR2BQ13705 512 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 USH1GQ495M9 461 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 MUM1L1Q5H9M0 696 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 NFXL1Q6ZNB6 911 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 RNF207Q6ZRF8 634 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 SKAP1Q86WV1 359 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 CCDC144CPQ8IYA2 1237 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 C7orf61Q8IZ16 206 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 ADGRF4Q8IZF3 695 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 FAM133AQ8N9E0 248 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 LSG1Q9H089 658 aaKnown RBP9.43□□□□□ -0.9
VPS53-214ENST00000572607 VAT1LQ9HCJ6 419 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 CYP39A1Q9NYL5 469 aa9.43□□□□□ -0.9
VPS53-214ENST00000572607 LOC102724159A0A0B4J2E5 919 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 CCDC69A6NI79 296 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 SLC27A2O14975 620 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 SNAI1O95863 264 aaPredicted RBP9.42□□□□□ -0.9
VPS53-214ENST00000572607 TAL1P17542 331 aaPredicted RBP9.42□□□□□ -0.9
VPS53-214ENST00000572607 SYN1P17600 705 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 BAATQ14032 418 aaPredicted RBP9.42□□□□□ -0.9
VPS53-214ENST00000572607 PWP2Q15269 919 aaKnown RBP9.42□□□□□ -0.9
VPS53-214ENST00000572607 LRRC41Q15345 812 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 SEC23AQ15436 765 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 ERICH6BQ5W0A0 696 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 CREB3L3Q68CJ9 461 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 STOX1Q6ZVD7 989 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 NOL8Q76FK4 1167 aaKnown RBP9.42□□□□□ -0.9
VPS53-214ENST00000572607 CHST3Q7LGC8 479 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 MCF2L2Q86YR7 1114 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 CTCFLQ8NI51 663 aaPredicted RBP9.42□□□□□ -0.9
VPS53-214ENST00000572607 TMEM87BQ96K49 555 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 MTA3Q9BTC8 594 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 AMNQ9BXJ7 453 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 MAF1Q9H063 256 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 CPVLQ9H3G5 476 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 PRKAG2Q9UGJ0 569 aa9.42□□□□□ -0.9
VPS53-214ENST00000572607 MRPL11Q9Y3B7 192 aaKnown RBP9.42□□□□□ -0.9
VPS53-214ENST00000572607 KLRF2D3W0D1 207 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 NFIBO00712 420 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 PRC1O43663 620 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 DUSP11O75319 330 aaKnown RBP9.41□□□□□ -0.9
VPS53-214ENST00000572607 PGK1P00558 417 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 KIF5BP33176 963 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 KCNC4Q03721 635 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 GRM4Q14833 912 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 QRICH1Q2TAL8 776 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 SLC30A10Q6XR72 485 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 PACS2Q86VP3 889 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 FBXO11Q86XK2 927 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 MB21D2Q8IYB1 491 aaPredicted RBP9.41□□□□□ -0.9
VPS53-214ENST00000572607 TDHQ8IZJ6 230 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 TMTC2Q8N394 836 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 NUP133Q8WUM0 1156 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 FGD4Q96M96 766 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 GUCD1Q96NT3 240 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 VTA1Q9NP79 307 aa9.41□□□□□ -0.9
VPS53-214ENST00000572607 TSR3Q9UJK0 312 aaKnown RBP9.41□□□□□ -0.9
VPS53-214ENST00000572607 SYNRGQ9UMZ2 1314 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 PALM3A6NDB9 673 aaPredicted RBP9.4□□□□□ -0.9
VPS53-214ENST00000572607 ZBTB5O15062 677 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 DDAH1O94760 285 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 C6orf222P0C671 652 aaPredicted RBP9.4□□□□□ -0.9
VPS53-214ENST00000572607 CALM1P0DP23 149 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 CALM2P0DP24 149 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 CALM3P0DP25 149 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 ADCYAP1R1P41586 468 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 GNAQP50148 359 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 ALDH5A1P51649 535 aaPredicted RBP9.4□□□□□ -0.9
VPS53-214ENST00000572607 RPS6P62753 249 aaKnown RBP9.4□□□□□ -0.9
VPS53-214ENST00000572607 TNFAIP2Q03169 654 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 PDE4DQ08499 809 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 KRT32Q14532 448 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 NBR1Q14596 966 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 NECTIN1Q15223 517 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 LRRC26Q2I0M4 334 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 CCDC144BQ3MJ40 725 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 SYNE3Q6ZMZ3 975 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 EEPD1Q7L9B9 569 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 HOMER1Q86YM7 354 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 FBXO16Q8IX29 292 aaPredicted RBP9.4□□□□□ -0.9
VPS53-214ENST00000572607 STAG2Q8N3U4 1231 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 PCSK9Q8NBP7 692 aaKnown RBP9.4□□□□□ -0.9
VPS53-214ENST00000572607 RGS22Q8NE09 1264 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 DNERQ8NFT8 737 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 CLEC4DQ8WXI8 215 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 FERMT2Q96AC1 680 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 LENG1Q96BZ8 264 aaPredicted RBP9.4□□□□□ -0.9
VPS53-214ENST00000572607 LZTS2Q9BRK4 669 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 TSEN34Q9BSV6 310 aaKnown RBP9.4□□□□□ -0.9
VPS53-214ENST00000572607 AP5M1Q9H0R1 490 aa9.4□□□□□ -0.9
VPS53-214ENST00000572607 JMJD4Q9H9V9 463 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms