RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 KIF28PB7ZC32 967 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 PDE6CP51160 858 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 DLGAP5Q15398 846 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 NAA35Q5VZE5 725 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 SH3GLB2Q9NR46 395 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 HOMER3Q9NSC5 361 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 ABCA9Q8IUA7 1624 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 DLC1Q96QB1 1528 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 MYL7Q01449 175 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 OXER1Q8TDS5 423 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 KIAA1210Q9ULL0 1709 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 USP17L3A6NCW0 530 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 USP17L4A6NCW7 530 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 GCFC2P16383 781 aaKnown RBP16.81■□□□□ 0.28
CIITA-204ENST00000570546 ADCY8P40145 1251 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 GKAP1Q5VSY0 366 aaPredicted RBP16.81■□□□□ 0.28
CIITA-204ENST00000570546 USP17L1Q7RTZ2 530 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 NLRX1Q86UT6 975 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 GDAQ9Y2T3 454 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 PALLDQ8WX93 1383 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 PCK1P35558 622 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 USP17L2Q6R6M4 530 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 KCTD1Q719H9 257 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 APBB1IPQ7Z5R6 666 aaPredicted RBP16.8■□□□□ 0.28
CIITA-204ENST00000570546 COA7Q96BR5 231 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 BAIAP2L1Q9UHR4 511 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 CCDC160A6NGH7 325 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 SPATA24Q86W54 205 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 PSMD1Q99460 953 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 AMNQ9BXJ7 453 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 ZC3H13Q5T200 1668 aaKnown RBP16.8■□□□□ 0.28
CIITA-204ENST00000570546 CD19P15391 556 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 CASP1P29466 404 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 CYP27A1Q02318 531 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 NEDD9Q14511 834 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 FAM133AQ8N9E0 248 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 THRAP3Q9Y2W1 955 aaKnown RBP16.8■□□□□ 0.28
CIITA-204ENST00000570546 UBN2Q6ZU65 1347 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 FTCDO95954 541 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 EXOSC10Q01780 885 aaKnown RBP16.8■□□□□ 0.28
CIITA-204ENST00000570546 TERF2Q15554 542 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 KIAA0825Q8IV33 1275 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 CCDC89Q8N998 374 aa16.8■□□□□ 0.28
CIITA-204ENST00000570546 CCDC97Q96F63 343 aaPredicted RBP16.8■□□□□ 0.28
CIITA-204ENST00000570546 PDE6BP35913 854 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 KIF11P52732 1056 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 PSMD2Q13200 908 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 NDST4Q9H3R1 872 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 ABHD10Q9NUJ1 306 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 GJA3Q9Y6H8 435 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 DDIT3P35638 169 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 ITIH3Q06033 890 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 ARMCX5Q6P1M9 558 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 LMNTD2Q8IXW0 634 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 UHMK1Q8TAS1 419 aaKnown RBP16.79■□□□□ 0.28
CIITA-204ENST00000570546 MCUR1Q96AQ8 359 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 BSDC1Q9NW68 430 aaPredicted RBP16.79■□□□□ 0.28
CIITA-204ENST00000570546 RNF14Q9UBS8 474 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 NCOA3Q9Y6Q9 1424 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 SLC16A2P36021 539 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 XKR9Q5GH70 373 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 PPM1KQ8N3J5 372 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 ARHGEF2Q92974 986 aaKnown RBP16.79■□□□□ 0.28
CIITA-204ENST00000570546 USP21Q9UK80 565 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 SERPING1P05155 500 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 ODR4Q5SWX8 454 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 CCDC62Q6P9F0 684 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 SHC4Q6S5L8 630 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 CCDC13Q8IYE1 715 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 FAM114A2Q9NRY5 505 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 RAB20Q9NX57 234 aa16.79■□□□□ 0.28
CIITA-204ENST00000570546 LARSQ9P2J5 1176 aaKnown RBP16.79■□□□□ 0.28
CIITA-204ENST00000570546 PSMC2P35998 433 aaKnown RBP16.78■□□□□ 0.28
CIITA-204ENST00000570546 NAA30Q147X3 362 aaPredicted RBP16.78■□□□□ 0.28
CIITA-204ENST00000570546 ABCB5Q2M3G0 1257 aa16.78■□□□□ 0.28
CIITA-204ENST00000570546 CCDC17Q96LX7 622 aa16.78■□□□□ 0.28
CIITA-204ENST00000570546 KCNG1Q9UIX4 513 aa16.78■□□□□ 0.28
CIITA-204ENST00000570546 NEXMIFQ5QGS0 1516 aa16.78■□□□□ 0.28
CIITA-204ENST00000570546 CDHR2Q9BYE9 1310 aa16.78■□□□□ 0.28
CIITA-204ENST00000570546 TESPA1A2RU30 521 aaPredicted RBP16.78■□□□□ 0.28
CIITA-204ENST00000570546 NOP56O00567 594 aaKnown RBP16.78■□□□□ 0.28
CIITA-204ENST00000570546 P3H4Q92791 437 aa16.78■□□□□ 0.28
CIITA-204ENST00000570546 C1orf112Q9NSG2 853 aa16.78■□□□□ 0.28
CIITA-204ENST00000570546 ZNF609O15014 1411 aa16.78■□□□□ 0.28
CIITA-204ENST00000570546 KRT19P08727 400 aa16.78■□□□□ 0.28
CIITA-204ENST00000570546 GAP43P17677 238 aa16.78■□□□□ 0.28
CIITA-204ENST00000570546 SEPT2Q15019 361 aa16.78■□□□□ 0.28
CIITA-204ENST00000570546 SYNE4Q8N205 404 aa16.78■□□□□ 0.28
CIITA-204ENST00000570546 AZI2Q9H6S1 392 aa16.78■□□□□ 0.28
CIITA-204ENST00000570546 VGLL3A8MV65 326 aa16.77■□□□□ 0.28
CIITA-204ENST00000570546 PGRMC1O00264 195 aaKnown RBP16.77■□□□□ 0.28
CIITA-204ENST00000570546 PPIP5K2O43314 1243 aa16.77■□□□□ 0.28
CIITA-204ENST00000570546 RCAN1P53805 252 aa16.77■□□□□ 0.28
CIITA-204ENST00000570546 MAP7D1Q3KQU3 841 aa16.77■□□□□ 0.28
CIITA-204ENST00000570546 ARHGEF16Q5VV41 709 aa16.77■□□□□ 0.28
CIITA-204ENST00000570546 KRT26Q7Z3Y9 468 aa16.77■□□□□ 0.28
CIITA-204ENST00000570546 DEPTORQ8TB45 409 aa16.77■□□□□ 0.28
CIITA-204ENST00000570546 PASKQ96RG2 1323 aa16.77■□□□□ 0.28
CIITA-204ENST00000570546 IRX5P78411 483 aaPredicted RBP16.77■□□□□ 0.28
CIITA-204ENST00000570546 ALX1Q15699 326 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 229.8 ms