RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ATXN10Q9UBB4 475 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 CHD4Q14839 1912 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 FGAP02671 866 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 SF3A3Q12874 501 aaKnown RBP eCLIP11.95□□□□□ -0.52e-6■■■■■ 37.8
CLK3-226ENST00000569406 RNF220Q5VTB9 566 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 RAB11FIP4Q86YS3 637 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 CCAR1Q8IX12 1150 aaKnown RBP11.95□□□□□ -0.5
CLK3-226ENST00000569406 CDC5LQ99459 802 aaKnown RBP11.95□□□□□ -0.5
CLK3-226ENST00000569406 FANCLQ9NW38 375 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 ABCF2Q9UG63 623 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 CTAGE9A4FU28 777 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 TRIM21P19474 475 aaKnown RBP11.94□□□□□ -0.5
CLK3-226ENST00000569406 TUBP50607 506 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 UBASH3AP57075 661 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 PIP4K2BP78356 416 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 P3H1Q32P28 736 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 CCDC38Q502W7 563 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 NCAPH2Q6IBW4 605 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 SMYD1Q8NB12 490 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 MYCBPAPQ8TBZ2 947 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 ZNF512BQ96KM6 892 aaPredicted RBP11.94□□□□□ -0.5
CLK3-226ENST00000569406 FGD4Q96M96 766 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 ZNF831Q5JPB2 1677 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 GOLGA8KD6RF30 607 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 STAT6P42226 847 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 TUBB4BP68371 445 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 FANCCQ00597 558 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 SLC4A8Q2Y0W8 1093 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 NCCRP1Q6ZVX7 275 aaPredicted RBP11.94□□□□□ -0.5
CLK3-226ENST00000569406 TBC1D1Q86TI0 1168 aaPredicted RBP11.94□□□□□ -0.5
CLK3-226ENST00000569406 MB21D2Q8IYB1 491 aaPredicted RBP11.94□□□□□ -0.5
CLK3-226ENST00000569406 FNBP4Q8N3X1 1017 aaPredicted RBP11.94□□□□□ -0.5
CLK3-226ENST00000569406 ARL8AQ96BM9 186 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 C8orf76Q96K31 380 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 NEDD4P46934 1319 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 SNAP23O00161 211 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 TMED1Q13445 227 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 SND1Q7KZF4 910 aaKnown RBP eCLIP11.94□□□□□ -0.5
CLK3-226ENST00000569406 NR1H4Q96RI1 486 aaPredicted RBP11.94□□□□□ -0.5
CLK3-226ENST00000569406 PIH1D3Q9NQM4 214 aaKnown RBP11.94□□□□□ -0.5
CLK3-226ENST00000569406 USH1CQ9Y6N9 552 aa11.94□□□□□ -0.5
CLK3-226ENST00000569406 TMEM221A6NGB7 291 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 ZFXP17010 805 aaPredicted RBP11.93□□□□□ -0.5
CLK3-226ENST00000569406 FKBP4Q02790 459 aaKnown RBP eCLIP11.93□□□□□ -0.5
CLK3-226ENST00000569406 BTG3Q14201 252 aaPredicted RBP11.93□□□□□ -0.5
CLK3-226ENST00000569406 FCHSD1Q86WN1 690 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 MYOCDQ8IZQ8 938 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 ARHGAP18Q8N392 663 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 GBP7Q8N8V2 638 aaPredicted RBP11.93□□□□□ -0.5
CLK3-226ENST00000569406 EHBP1Q8NDI1 1231 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 WDR66Q8TBY9 1149 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 A6NNZ2 444 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 TMCC1O94876 653 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 ATP1A3P13637 1013 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 TUBB8Q3ZCM7 444 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 WDR75Q8IWA0 830 aaKnown RBP11.93□□□□□ -0.5
CLK3-226ENST00000569406 RNPC3Q96LT9 517 aaKnown RBP11.93□□□□□ -0.5
CLK3-226ENST00000569406 TCHPQ9BT92 498 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 MRPL44Q9H9J2 332 aaKnown RBP11.93□□□□□ -0.5
CLK3-226ENST00000569406 STARD3NLO95772 234 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 LMNB1P20700 586 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 FLT3P36888 993 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 ADKP55263 362 aaKnown RBP11.93□□□□□ -0.5
CLK3-226ENST00000569406 USP46P62068 366 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 XRCC4Q13426 336 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 PKN1Q16512 942 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 LONP2Q86WA8 852 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 CCDC63Q8NA47 563 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 ZBTB8BQ8NAP8 495 aaPredicted RBP11.93□□□□□ -0.5
CLK3-226ENST00000569406 HVCN1Q96D96 273 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 CTDP1Q9Y5B0 961 aaPredicted RBP11.93□□□□□ -0.5
CLK3-226ENST00000569406 ZC3H4Q9UPT8 1303 aaKnown RBP11.93□□□□□ -0.5
CLK3-226ENST00000569406 TIAM2Q8IVF5 1701 aa11.93□□□□□ -0.5
CLK3-226ENST00000569406 ERVV-1B6SEH8 477 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 BACH1O14867 736 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 IFIT5Q13325 482 aaKnown RBP11.92□□□□□ -0.5
CLK3-226ENST00000569406 ITPK1Q13572 414 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 PTGISQ16647 500 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 HSP90AA4PQ58FG1 418 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 ANKRD20A2Q5SQ80 823 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 ANKRD20A1Q5TYW2 823 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 ANKRD20A3Q5VUR7 823 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 WDR93Q6P2C0 686 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 LMNTD2Q8IXW0 634 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 LLPHQ9BRT6 129 aaKnown RBP11.92□□□□□ -0.5
CLK3-226ENST00000569406 CHMP2BQ9UQN3 213 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 SPATA31A1Q5TZJ5 1347 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 TRIM43BA6NCK2 446 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 MCM3P25205 808 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 STIP1P31948 543 aaKnown RBP11.92□□□□□ -0.5
CLK3-226ENST00000569406 HDAC4P56524 1084 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 APBA1Q02410 837 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 ADAM9Q13443 819 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 POSTNQ15063 836 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 RCN1Q15293 331 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 FAAH2Q6GMR7 532 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 KANK3Q6NY19 840 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 MARCH10Q8NA82 808 aaPredicted RBP11.92□□□□□ -0.5
CLK3-226ENST00000569406 CCHCR1Q8TD31 782 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 NAF1Q96HR8 494 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms