RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 C17orf99Q6UX52 265 aa11.98□□□□□ -0.49
CDH3-210ENST00000569117 GPRC5AQ8NFJ5 357 aa11.98□□□□□ -0.49
CDH3-210ENST00000569117 CLEC4DQ8WXI8 215 aa11.98□□□□□ -0.49
CDH3-210ENST00000569117 CUL5Q93034 780 aa11.98□□□□□ -0.49
CDH3-210ENST00000569117 ACAD9Q9H845 621 aa11.98□□□□□ -0.49
CDH3-210ENST00000569117 C6orf50Q9HD87 102 aa11.98□□□□□ -0.49
CDH3-210ENST00000569117 HOMER2Q9NSB8 354 aa11.98□□□□□ -0.49
CDH3-210ENST00000569117 SAGE1Q9NXZ1 904 aa11.98□□□□□ -0.49
CDH3-210ENST00000569117 FBXO40Q9UH90 709 aa11.98□□□□□ -0.49
CDH3-210ENST00000569117 PCDHA4Q9UN74 947 aa11.98□□□□□ -0.49
CDH3-210ENST00000569117 KCNJ14Q9UNX9 436 aa11.98□□□□□ -0.49
CDH3-210ENST00000569117 MTMR6Q9Y217 621 aa11.98□□□□□ -0.49
CDH3-210ENST00000569117 VPS37CA5D8V6 355 aaPredicted RBP11.97□□□□□ -0.49
CDH3-210ENST00000569117 SMCO2A6NFE2 343 aa11.97□□□□□ -0.49
CDH3-210ENST00000569117 M0R2N6 131 aa11.97□□□□□ -0.49
CDH3-210ENST00000569117 PIK3CDO00329 1044 aa11.97□□□□□ -0.49
CDH3-210ENST00000569117 KRT2P35908 639 aa11.97□□□□□ -0.49
CDH3-210ENST00000569117 CLK2P49760 499 aaKnown RBP11.97□□□□□ -0.49
CDH3-210ENST00000569117 HSD17B4P51659 736 aa11.97□□□□□ -0.49
CDH3-210ENST00000569117 SAFBQ15424 915 aaKnown RBP eCLIP11.97□□□□□ -0.49
CDH3-210ENST00000569117 MUM1L1Q5H9M0 696 aa11.97□□□□□ -0.49
CDH3-210ENST00000569117 MCF2L2Q86YR7 1114 aa11.97□□□□□ -0.49
CDH3-210ENST00000569117 DIS3L2Q8IYB7 885 aaKnown RBP11.97□□□□□ -0.49
CDH3-210ENST00000569117 REXO1Q8N1G1 1221 aaKnown RBP11.97□□□□□ -0.49
CDH3-210ENST00000569117 SAMD3Q8N6K7 520 aa11.97□□□□□ -0.49
CDH3-210ENST00000569117 BICD2Q8TD16 824 aa11.97□□□□□ -0.49
CDH3-210ENST00000569117 CCDC97Q96F63 343 aaPredicted RBP11.97□□□□□ -0.49
CDH3-210ENST00000569117 TRERF1Q96PN7 1200 aa11.97□□□□□ -0.49
CDH3-210ENST00000569117 MROH8Q9H579 483 aa11.97□□□□□ -0.49
CDH3-210ENST00000569117 PSTPIP2Q9H939 334 aa11.97□□□□□ -0.49
CDH3-210ENST00000569117 BRMS1Q9HCU9 246 aa11.97□□□□□ -0.49
CDH3-210ENST00000569117 CPA4Q9UI42 421 aa11.97□□□□□ -0.49
CDH3-210ENST00000569117 CASP8AP2Q9UKL3 1982 aa11.96□□□□□ -0.49
CDH3-210ENST00000569117 MYH7BA7E2Y1 1941 aa11.96□□□□□ -0.49
CDH3-210ENST00000569117 ZNFX1Q9P2E3 1918 aaKnown RBP11.96□□□□□ -0.49
CDH3-210ENST00000569117 PFASO15067 1338 aa11.96□□□□□ -0.49
CDH3-210ENST00000569117 MEIS2O14770 477 aa11.96□□□□□ -0.49
CDH3-210ENST00000569117 BRD1O95696 1058 aa11.96□□□□□ -0.49
CDH3-210ENST00000569117 ZSCAN22P10073 491 aaPredicted RBP11.96□□□□□ -0.49
CDH3-210ENST00000569117 ERCC3P19447 782 aa11.96□□□□□ -0.49
CDH3-210ENST00000569117 MRPL12P52815 198 aaKnown RBP11.96□□□□□ -0.49
CDH3-210ENST00000569117 AP3B2Q13367 1082 aa11.96□□□□□ -0.49
CDH3-210ENST00000569117 PKP1Q13835 747 aa11.96□□□□□ -0.49
CDH3-210ENST00000569117 Q3C1V9 767 aa11.96□□□□□ -0.49
CDH3-210ENST00000569117 NCAPG2Q86XI2 1143 aa11.96□□□□□ -0.49
CDH3-210ENST00000569117 BLIDQ8IZY5 108 aa11.96□□□□□ -0.49
CDH3-210ENST00000569117 TNFRSF25Q93038 417 aa11.96□□□□□ -0.49
CDH3-210ENST00000569117 PORCNQ9H237 461 aa11.96□□□□□ -0.49
CDH3-210ENST00000569117 FOXP1Q9H334 677 aaPredicted RBP11.96□□□□□ -0.49
CDH3-210ENST00000569117 A1CFQ9NQ94 594 aaKnown RBP11.96□□□□□ -0.49
CDH3-210ENST00000569117 RNF186Q9NXI6 227 aa11.96□□□□□ -0.49
CDH3-210ENST00000569117 MAP3K20Q9NYL2 800 aaKnown RBP11.96□□□□□ -0.49
CDH3-210ENST00000569117 FRMPD4Q14CM0 1322 aa11.95□□□□□ -0.5
CDH3-210ENST00000569117 GCOM1H8Y6P7 765 aaPredicted RBP11.95□□□□□ -0.5
CDH3-210ENST00000569117 CFBP00751 764 aa11.95□□□□□ -0.5
CDH3-210ENST00000569117 POLR2MP0CAP2 368 aa11.95□□□□□ -0.5
CDH3-210ENST00000569117 U2AF2P26368 475 aaKnown RBP eCLIP11.95□□□□□ -0.5
CDH3-210ENST00000569117 MAPK4P31152 587 aa11.95□□□□□ -0.5
CDH3-210ENST00000569117 NUCB2P80303 420 aa11.95□□□□□ -0.5
CDH3-210ENST00000569117 MAP2K1Q02750 393 aaPredicted RBP11.95□□□□□ -0.5
CDH3-210ENST00000569117 RESTQ13127 1097 aa11.95□□□□□ -0.5
CDH3-210ENST00000569117 TSR1Q2NL82 804 aaKnown RBP11.95□□□□□ -0.5
CDH3-210ENST00000569117 MCTP2Q6DN12 878 aa11.95□□□□□ -0.5
CDH3-210ENST00000569117 SLC30A10Q6XR72 485 aa11.95□□□□□ -0.5
CDH3-210ENST00000569117 ABRAQ8N0Z2 381 aa11.95□□□□□ -0.5
CDH3-210ENST00000569117 EFCC1Q9HA90 598 aa11.95□□□□□ -0.5
CDH3-210ENST00000569117 BTBD18B2RXH4 712 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 KIF28PB7ZC32 967 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 ADAMTS3O15072 1205 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 TRPA1O75762 1119 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 F13A1P00488 732 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 RPS6P62753 249 aaKnown RBP11.94□□□□□ -0.5
CDH3-210ENST00000569117 NR5A1Q13285 461 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 UBE2SQ16763 222 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 NOM1Q5C9Z4 860 aaKnown RBP11.94□□□□□ -0.5
CDH3-210ENST00000569117 MYSM1Q5VVJ2 828 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 USP17L6PQ6QN14 398 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 NSMFQ6X4W1 530 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 RNF207Q6ZRF8 634 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 BRAPQ7Z569 592 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 METTL3Q86U44 580 aaKnown RBP11.94□□□□□ -0.5
CDH3-210ENST00000569117 NOSTRINQ8IVI9 506 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 DNAJC5GQ8N7S2 189 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 R3HDMLQ9H3Y0 253 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 CYP39A1Q9NYL5 469 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 CHMP5Q9NZZ3 219 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 PCDHA6Q9UN73 950 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 ZDHHC9Q9Y397 364 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 PCDHA8Q9Y5H6 950 aa11.94□□□□□ -0.5
CDH3-210ENST00000569117 SLC34A2O95436 690 aa11.93□□□□□ -0.5
CDH3-210ENST00000569117 TBC1D8O95759 1140 aa11.93□□□□□ -0.5
CDH3-210ENST00000569117 FOSP01100 380 aaPredicted RBP11.93□□□□□ -0.5
CDH3-210ENST00000569117 OATP04181 439 aa11.93□□□□□ -0.5
CDH3-210ENST00000569117 FCER1AP12319 257 aa11.93□□□□□ -0.5
CDH3-210ENST00000569117 HOXA13P31271 388 aaPredicted RBP11.93□□□□□ -0.5
CDH3-210ENST00000569117 LACTBP83111 547 aaPredicted RBP11.93□□□□□ -0.5
CDH3-210ENST00000569117 GNL2Q13823 731 aaKnown RBP11.93□□□□□ -0.5
CDH3-210ENST00000569117 BAATQ14032 418 aaPredicted RBP11.93□□□□□ -0.5
CDH3-210ENST00000569117 GRB14Q14449 540 aa11.93□□□□□ -0.5
CDH3-210ENST00000569117 KCTD2Q14681 263 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms