RNA–Protein interactions for RNA: ENST00000567674.1

CDH3-206, Transcript of cadherin 3, humanhuman

TSL 3

Gene CDH3, Length 892 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-206ENST00000567674 RCAN1P53805 252 aa12.99□□□□□ -0.33
CDH3-206ENST00000567674 SNAP25P60880 206 aa12.99□□□□□ -0.33
CDH3-206ENST00000567674 FAAP100Q0VG06 881 aa12.99□□□□□ -0.33
CDH3-206ENST00000567674 TMEM67Q5HYA8 995 aa12.99□□□□□ -0.33
CDH3-206ENST00000567674 NOL8Q76FK4 1167 aaKnown RBP12.99□□□□□ -0.33
CDH3-206ENST00000567674 RASGRP2Q7LDG7 609 aa12.99□□□□□ -0.33
CDH3-206ENST00000567674 CTCFLQ8NI51 663 aaPredicted RBP12.99□□□□□ -0.33
CDH3-206ENST00000567674 SYTL5Q8TDW5 730 aaPredicted RBP12.99□□□□□ -0.33
CDH3-206ENST00000567674 EMID1Q96A84 441 aaPredicted RBP12.99□□□□□ -0.33
CDH3-206ENST00000567674 FERMT2Q96AC1 680 aa12.99□□□□□ -0.33
CDH3-206ENST00000567674 CDX2Q99626 313 aaPredicted RBP12.99□□□□□ -0.33
CDH3-206ENST00000567674 TMEM39AQ9NV64 488 aa12.99□□□□□ -0.33
CDH3-206ENST00000567674 DYNC1LI2O43237 492 aaPredicted RBP12.98□□□□□ -0.33
CDH3-206ENST00000567674 ADCY6O43306 1168 aa12.98□□□□□ -0.33
CDH3-206ENST00000567674 DHX16O60231 1041 aaKnown RBP12.98□□□□□ -0.33
CDH3-206ENST00000567674 CD4P01730 458 aa12.98□□□□□ -0.33
CDH3-206ENST00000567674 MYCNP04198 464 aaPredicted RBP12.98□□□□□ -0.33
CDH3-206ENST00000567674 XRRA1Q6P2D8 792 aa12.98□□□□□ -0.33
CDH3-206ENST00000567674 SGMS1Q86VZ5 419 aa12.98□□□□□ -0.33
CDH3-206ENST00000567674 RMDN3Q96TC7 470 aa12.98□□□□□ -0.33
CDH3-206ENST00000567674 TBX21Q9UL17 535 aa12.98□□□□□ -0.33
CDH3-206ENST00000567674 PCDHA1Q9Y5I3 950 aa12.98□□□□□ -0.33
CDH3-206ENST00000567674 LAMA2P24043 3122 aaKnown RBP12.98□□□□□ -0.33
CDH3-206ENST00000567674 PRUNE2Q8WUY3 3088 aa12.98□□□□□ -0.33
CDH3-206ENST00000567674 TMEM265A0A087WTH1 108 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 TRIM43BA6NCK2 446 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 SLC27A2O14975 620 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 CDC45O75419 566 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 RAG1P15918 1043 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 ITGA7Q13683 1181 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 USH1GQ495M9 461 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 CREB3L3Q68CJ9 461 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 MFSD5Q6N075 450 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 NFRKBQ6P4R8 1299 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 CCDC62Q6P9F0 684 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 SLC30A10Q6XR72 485 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 FBXO16Q8IX29 292 aaPredicted RBP12.97□□□□□ -0.33
CDH3-206ENST00000567674 FAM126BQ8IXS8 530 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 STAG2Q8N3U4 1231 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 FBXL16Q8N461 479 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 TMEM199Q8N511 208 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 VTI1AQ96AJ9 217 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 TRIM43Q96BQ3 446 aaPredicted RBP12.97□□□□□ -0.33
CDH3-206ENST00000567674 CCDC136Q96JN2 1154 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 LY9Q9HBG7 655 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 ANO2Q9NQ90 1003 aa12.97□□□□□ -0.33
CDH3-206ENST00000567674 GPHNQ9NQX3 736 aaPredicted RBP12.97□□□□□ -0.33
CDH3-206ENST00000567674 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.96□□□□□ -0.33
CDH3-206ENST00000567674 CCDC69A6NI79 296 aa12.96□□□□□ -0.33
CDH3-206ENST00000567674 GCOM1H8Y6P7 765 aaPredicted RBP12.96□□□□□ -0.33
CDH3-206ENST00000567674 PIK3CDO00329 1044 aa12.96□□□□□ -0.33
CDH3-206ENST00000567674 PRC1O43663 620 aa12.96□□□□□ -0.33
CDH3-206ENST00000567674 EIF5BO60841 1220 aaKnown RBP12.96□□□□□ -0.33
CDH3-206ENST00000567674 POLR2MP0CAP2 368 aa12.96□□□□□ -0.33
CDH3-206ENST00000567674 TXNP10599 105 aaKnown RBP12.96□□□□□ -0.33
CDH3-206ENST00000567674 HOXD11P31277 338 aaPredicted RBP12.96□□□□□ -0.33
CDH3-206ENST00000567674 ANTXR2P58335 489 aa12.96□□□□□ -0.33
CDH3-206ENST00000567674 SMAD3P84022 425 aaKnown RBP12.96□□□□□ -0.33
CDH3-206ENST00000567674 MDM2Q00987 491 aaPredicted RBP12.96□□□□□ -0.33
CDH3-206ENST00000567674 PPIGQ13427 754 aaKnown RBP eCLIP12.96□□□□□ -0.33
CDH3-206ENST00000567674 ARHGEF16Q5VV41 709 aa12.96□□□□□ -0.33
CDH3-206ENST00000567674 SYNE3Q6ZMZ3 975 aa12.96□□□□□ -0.33
CDH3-206ENST00000567674 VSIG10LQ86VR7 867 aa12.96□□□□□ -0.33
CDH3-206ENST00000567674 ZNF654Q8IZM8 581 aa12.96□□□□□ -0.33
CDH3-206ENST00000567674 CHMP4CQ96CF2 233 aa12.96□□□□□ -0.33
CDH3-206ENST00000567674 RRP36Q96EU6 259 aaKnown RBP12.96□□□□□ -0.33
CDH3-206ENST00000567674 MTG1Q9BT17 334 aaPredicted RBP12.96□□□□□ -0.33
CDH3-206ENST00000567674 VAT1LQ9HCJ6 419 aa12.96□□□□□ -0.33
CDH3-206ENST00000567674 PXMP2Q9NR77 195 aa12.96□□□□□ -0.33
CDH3-206ENST00000567674 PDGFCQ9NRA1 345 aa12.96□□□□□ -0.33
CDH3-206ENST00000567674 LRRC37A2A6NM11 1700 aa12.96□□□□□ -0.34
CDH3-206ENST00000567674 MYADML2A6NDP7 307 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 hCG_1984214I3L0E3 225 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 SH2B2O14492 632 aaPredicted RBP12.95□□□□□ -0.34
CDH3-206ENST00000567674 PQBP1O60828 265 aaKnown RBP12.95□□□□□ -0.34
CDH3-206ENST00000567674 PARNO95453 639 aaKnown RBP12.95□□□□□ -0.34
CDH3-206ENST00000567674 GH1P01241 217 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 NR3C2P08235 984 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 PFKMP08237 780 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 PURAQ00577 322 aaKnown RBP12.95□□□□□ -0.34
CDH3-206ENST00000567674 FPGSQ05932 587 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 LAMC2Q13753 1193 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 TJAP1Q5JTD0 557 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 DHX32Q7L7V1 743 aaKnown RBP12.95□□□□□ -0.34
CDH3-206ENST00000567674 SESTD1Q86VW0 696 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 ZNF713Q8N859 430 aaPredicted RBP12.95□□□□□ -0.34
CDH3-206ENST00000567674 BADQ92934 168 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 KCNB2Q92953 911 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 LENG1Q96BZ8 264 aaPredicted RBP12.95□□□□□ -0.34
CDH3-206ENST00000567674 NEK1Q96PY6 1258 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 PDCD2LQ9BRP1 358 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 PRDM5Q9NQX1 630 aaPredicted RBP12.95□□□□□ -0.34
CDH3-206ENST00000567674 RBM28Q9NW13 759 aaKnown RBP12.95□□□□□ -0.34
CDH3-206ENST00000567674 SEC63Q9UGP8 760 aaKnown RBP12.95□□□□□ -0.34
CDH3-206ENST00000567674 RAPGEFL1Q9UHV5 662 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 SLC12A7Q9Y666 1083 aa12.95□□□□□ -0.34
CDH3-206ENST00000567674 MCM3APO60318 1980 aa12.94□□□□□ -0.34
CDH3-206ENST00000567674 FRMPD4Q14CM0 1322 aa12.94□□□□□ -0.34
CDH3-206ENST00000567674 OPLAHO14841 1288 aa12.94□□□□□ -0.34
CDH3-206ENST00000567674 CYTH3O43739 400 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms