RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 COL20A1Q9P218 1284 aa23.58■■□□□ 1.37
CLN3-212ENST00000564574 ADD3Q9UEY8 706 aaKnown RBP23.58■■□□□ 1.37
CLN3-212ENST00000564574 MYH15Q9Y2K3 1946 aa23.58■■□□□ 1.37
CLN3-212ENST00000564574 FRMPD4Q14CM0 1322 aa23.58■■□□□ 1.36
CLN3-212ENST00000564574 BRD1O95696 1058 aa23.57■■□□□ 1.36
CLN3-212ENST00000564574 CTGFP29279 349 aa23.57■■□□□ 1.36
CLN3-212ENST00000564574 MAP2K5Q13163 448 aa23.57■■□□□ 1.36
CLN3-212ENST00000564574 NONOQ15233 471 aaKnown RBP eCLIP23.57■■□□□ 1.36
CLN3-212ENST00000564574 BRAPQ7Z569 592 aa23.57■■□□□ 1.36
CLN3-212ENST00000564574 CD99L2Q8TCZ2 262 aa23.57■■□□□ 1.36
CLN3-212ENST00000564574 TRIM47Q96LD4 638 aa23.57■■□□□ 1.36
CLN3-212ENST00000564574 DIS3Q9Y2L1 958 aaKnown RBP23.57■■□□□ 1.36
CLN3-212ENST00000564574 RPTORQ8N122 1335 aa23.57■■□□□ 1.36
CLN3-212ENST00000564574 B4DLN1 442 aa23.56■■□□□ 1.36
CLN3-212ENST00000564574 KIF28PB7ZC32 967 aa23.56■■□□□ 1.36
CLN3-212ENST00000564574 HSPA8P11142 646 aaKnown RBP23.56■■□□□ 1.36
CLN3-212ENST00000564574 HOXD10P28358 340 aa23.56■■□□□ 1.36
CLN3-212ENST00000564574 DPP9Q86TI2 863 aa23.56■■□□□ 1.36
CLN3-212ENST00000564574 NSUN6Q8TEA1 469 aaKnown RBP23.56■■□□□ 1.36
CLN3-212ENST00000564574 USP6NLQ92738 828 aa23.56■■□□□ 1.36
CLN3-212ENST00000564574 TAAR1Q96RJ0 339 aa23.56■■□□□ 1.36
CLN3-212ENST00000564574 RMDN3Q96TC7 470 aa23.56■■□□□ 1.36
CLN3-212ENST00000564574 MPHOSPH6Q99547 160 aaKnown RBP23.56■■□□□ 1.36
CLN3-212ENST00000564574 ARHGAP39Q9C0H5 1083 aa23.56■■□□□ 1.36
CLN3-212ENST00000564574 GJD2Q9UKL4 321 aa23.56■■□□□ 1.36
CLN3-212ENST00000564574 F13A1P00488 732 aa23.55■■□□□ 1.36
CLN3-212ENST00000564574 PGK2P07205 417 aa23.55■■□□□ 1.36
CLN3-212ENST00000564574 HOXC6P09630 235 aa23.55■■□□□ 1.36
CLN3-212ENST00000564574 RGS2P41220 211 aa23.55■■□□□ 1.36
CLN3-212ENST00000564574 CNTN2Q02246 1040 aa23.55■■□□□ 1.36
CLN3-212ENST00000564574 RESTQ13127 1097 aa23.55■■□□□ 1.36
CLN3-212ENST00000564574 PKP1Q13835 747 aa23.55■■□□□ 1.36
CLN3-212ENST00000564574 ZNF792Q3KQV3 632 aa23.55■■□□□ 1.36
CLN3-212ENST00000564574 ARHGEF16Q5VV41 709 aa23.55■■□□□ 1.36
CLN3-212ENST00000564574 PIK3AP1Q6ZUJ8 805 aa23.55■■□□□ 1.36
CLN3-212ENST00000564574 ZNF467Q7Z7K2 595 aaPredicted RBP23.55■■□□□ 1.36
CLN3-212ENST00000564574 PXMP2Q9NR77 195 aa23.55■■□□□ 1.36
CLN3-212ENST00000564574 CHMP5Q9NZZ3 219 aa23.55■■□□□ 1.36
CLN3-212ENST00000564574 TSKSQ9UJT2 592 aa23.55■■□□□ 1.36
CLN3-212ENST00000564574 COBLO75128 1261 aa23.54■■□□□ 1.36
CLN3-212ENST00000564574 SREBF1P36956 1147 aa23.54■■□□□ 1.36
CLN3-212ENST00000564574 ALDH5A1P51649 535 aaPredicted RBP23.54■■□□□ 1.36
CLN3-212ENST00000564574 PGBD1Q96JS3 809 aa23.54■■□□□ 1.36
CLN3-212ENST00000564574 IWS1Q96ST2 819 aa23.54■■□□□ 1.36
CLN3-212ENST00000564574 SOWAHBA6NEL2 793 aa23.53■■□□□ 1.36
CLN3-212ENST00000564574 ECM2O94769 699 aaPredicted RBP23.53■■□□□ 1.36
CLN3-212ENST00000564574 PRMT2P55345 433 aa23.53■■□□□ 1.36
CLN3-212ENST00000564574 XRRA1Q6P2D8 792 aa23.53■■□□□ 1.36
CLN3-212ENST00000564574 FERMT3Q86UX7 667 aa23.53■■□□□ 1.36
CLN3-212ENST00000564574 TBCKQ8TEA7 893 aa23.53■■□□□ 1.36
CLN3-212ENST00000564574 APBA2Q99767 749 aa23.53■■□□□ 1.36
CLN3-212ENST00000564574 PDCD2LQ9BRP1 358 aa23.53■■□□□ 1.36
CLN3-212ENST00000564574 NOL7Q9UMY1 257 aaKnown RBP23.53■■□□□ 1.36
CLN3-212ENST00000564574 ZDHHC9Q9Y397 364 aa23.53■■□□□ 1.36
CLN3-212ENST00000564574 LRRC37A2A6NM11 1700 aa23.53■■□□□ 1.36
CLN3-212ENST00000564574 ASB14A6NK59 587 aa23.52■■□□□ 1.36
CLN3-212ENST00000564574 CYP3A4P08684 503 aa23.52■■□□□ 1.36
CLN3-212ENST00000564574 TRAPPC10P48553 1259 aa23.52■■□□□ 1.36
CLN3-212ENST00000564574 USP11P51784 963 aa23.52■■□□□ 1.36
CLN3-212ENST00000564574 PGM5Q15124 567 aa23.52■■□□□ 1.36
CLN3-212ENST00000564574 EARS2Q5JPH6 523 aaKnown RBP23.52■■□□□ 1.36
CLN3-212ENST00000564574 MSL3Q8N5Y2 521 aaKnown RBP23.52■■□□□ 1.36
CLN3-212ENST00000564574 FGD4Q96M96 766 aa23.52■■□□□ 1.36
CLN3-212ENST00000564574 PURBQ96QR8 312 aaKnown RBP23.52■■□□□ 1.36
CLN3-212ENST00000564574 NAP1L4Q99733 375 aaKnown RBP23.52■■□□□ 1.36
CLN3-212ENST00000564574 SRRDQ9UH36 339 aa23.52■■□□□ 1.36
CLN3-212ENST00000564574 XRCC5P13010 732 aaKnown RBP23.51■■□□□ 1.35
CLN3-212ENST00000564574 EIF2AK2P19525 551 aaKnown RBP23.51■■□□□ 1.35
CLN3-212ENST00000564574 ARHGAP4P98171 946 aa23.51■■□□□ 1.35
CLN3-212ENST00000564574 INF2Q27J81 1249 aa23.51■■□□□ 1.35
CLN3-212ENST00000564574 RILPL1Q5EBL4 403 aa23.51■■□□□ 1.35
CLN3-212ENST00000564574 PCNX4Q63HM2 1172 aa23.51■■□□□ 1.35
CLN3-212ENST00000564574 NEK8Q86SG6 692 aa23.51■■□□□ 1.35
CLN3-212ENST00000564574 CRYGNQ8WXF5 182 aa23.51■■□□□ 1.35
CLN3-212ENST00000564574 ATP6V1DQ9Y5K8 247 aa23.51■■□□□ 1.35
CLN3-212ENST00000564574 NR3C2P08235 984 aa23.5■■□□□ 1.35
CLN3-212ENST00000564574 EDNRBP24530 442 aa23.5■■□□□ 1.35
CLN3-212ENST00000564574 CCND2P30279 289 aa23.5■■□□□ 1.35
CLN3-212ENST00000564574 IRF5Q13568 498 aa23.5■■□□□ 1.35
CLN3-212ENST00000564574 MYSM1Q5VVJ2 828 aa23.5■■□□□ 1.35
CLN3-212ENST00000564574 MOXD1Q6UVY6 613 aa23.5■■□□□ 1.35
CLN3-212ENST00000564574 TRMT44Q8IYL2 757 aaKnown RBP23.5■■□□□ 1.35
CLN3-212ENST00000564574 MORC4Q8TE76 937 aa23.5■■□□□ 1.35
CLN3-212ENST00000564574 MAML3Q96JK9 1138 aa23.5■■□□□ 1.35
CLN3-212ENST00000564574 MCM3APO60318 1980 aa23.5■■□□□ 1.35
CLN3-212ENST00000564574 ASTN1O14525 1302 aa23.5■■□□□ 1.35
CLN3-212ENST00000564574 KIAA1217Q5T5P2 1943 aa23.49■■□□□ 1.35
CLN3-212ENST00000564574 FAM205CA6NFA0 338 aa23.49■■□□□ 1.35
CLN3-212ENST00000564574 STAM2O75886 525 aa23.49■■□□□ 1.35
CLN3-212ENST00000564574 CYP2B6P20813 491 aa23.49■■□□□ 1.35
CLN3-212ENST00000564574 FLT3LGP49771 235 aa23.49■■□□□ 1.35
CLN3-212ENST00000564574 CAP1Q01518 475 aa23.49■■□□□ 1.35
CLN3-212ENST00000564574 PRKCZQ05513 592 aa23.49■■□□□ 1.35
CLN3-212ENST00000564574 FOXD4L5Q5VV16 416 aaPredicted RBP23.49■■□□□ 1.35
CLN3-212ENST00000564574 OLFML2BQ68BL8 750 aa23.49■■□□□ 1.35
CLN3-212ENST00000564574 MAMDC4Q6UXC1 1216 aa23.49■■□□□ 1.35
CLN3-212ENST00000564574 NPLOC4Q8TAT6 608 aa23.49■■□□□ 1.35
CLN3-212ENST00000564574 FOXD4L4Q8WXT5 416 aaPredicted RBP23.49■■□□□ 1.35
CLN3-212ENST00000564574 GABRQQ9UN88 632 aa23.49■■□□□ 1.35
CLN3-212ENST00000564574 GCFC2P16383 781 aaKnown RBP23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms