RNA–Protein interactions for RNA: ENST00000561055.1

RABGGTA-221, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 2

Gene RABGGTA, Length 735 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-221ENST00000561055 NSUN7Q8NE18 718 aaKnown RBP11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 TRPV1Q8NER1 839 aa11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 SMARCC2Q8TAQ2 1214 aa11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 CCDC12Q8WUD4 166 aaPredicted RBP11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 GPKOWQ92917 476 aaPredicted RBP eCLIP11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 PURBQ96QR8 312 aaKnown RBP11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 RMDN3Q96TC7 470 aa11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 MPHOSPH6Q99547 160 aaKnown RBP11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 UNC93B1Q9H1C4 597 aa11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 PSTPIP2Q9H939 334 aa11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 PXMP2Q9NR77 195 aa11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 BIN2Q9UBW5 565 aaPredicted RBP11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 TNRC18O15417 2968 aaPredicted RBP11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 BRCA2P51587 3418 aa11.08□□□□□ -0.64
RABGGTA-221ENST00000561055 RBM47A0AV96 593 aaKnown RBP11.07□□□□□ -0.64
RABGGTA-221ENST00000561055 SMCO2A6NFE2 343 aa11.07□□□□□ -0.64
RABGGTA-221ENST00000561055 SEPT4O43236 478 aa11.07□□□□□ -0.64
RABGGTA-221ENST00000561055 MSCO60682 206 aa11.07□□□□□ -0.64
RABGGTA-221ENST00000561055 NAPAP54920 295 aa11.07□□□□□ -0.64
RABGGTA-221ENST00000561055 NOL8Q76FK4 1167 aaKnown RBP11.07□□□□□ -0.64
RABGGTA-221ENST00000561055 CCDC148Q8NFR7 591 aa11.07□□□□□ -0.64
RABGGTA-221ENST00000561055 CUL5Q93034 780 aa11.07□□□□□ -0.64
RABGGTA-221ENST00000561055 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.07□□□□□ -0.64
RABGGTA-221ENST00000561055 VTA1Q9NP79 307 aa11.07□□□□□ -0.64
RABGGTA-221ENST00000561055 CNPY2Q9Y2B0 182 aa11.07□□□□□ -0.64
RABGGTA-221ENST00000561055 SGPL1O95470 568 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 FOSP01100 380 aaPredicted RBP11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 NR3C2P08235 984 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 GNA11P29992 359 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 CCND3P30281 292 aaPredicted RBP11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 HOXA13P31271 388 aaPredicted RBP11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 GJA8P48165 433 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 ACVR2BQ13705 512 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 PGM5Q15124 567 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 PRAMEF19Q5SWL8 479 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 LHX8Q68G74 356 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 IQSEC1Q6DN90 963 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 GALNT17Q6IS24 598 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 TAPT1Q6NXT6 567 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 XRRA1Q6P2D8 792 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 USP17L6PQ6QN14 398 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 VSIG10LQ86VR7 867 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 WASF1Q92558 559 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 SHISA4Q96DD7 197 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 TMX3Q96JJ7 454 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 PDCD2LQ9BRP1 358 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 TMEM106CQ9BVX2 250 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 CRISPLD2Q9H0B8 497 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 RNF208Q9H0X6 261 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 C6orf50Q9HD87 102 aa11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 ORC3Q9UBD5 711 aaPredicted RBP11.06□□□□□ -0.64
RABGGTA-221ENST00000561055 EIF3JO75822 258 aaKnown RBP11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 STAM2O75886 525 aa11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 AKR1A1P14550 325 aa11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 ADCY7P51828 1080 aa11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 NKX3-2P78367 333 aa11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 PDE4DQ08499 809 aa11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 AP3B2Q13367 1082 aa11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 STXBP2Q15833 593 aa11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 ARHGEF16Q5VV41 709 aa11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 CCDC83Q8IWF9 413 aa11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 DAGLBQ8NCG7 672 aa11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 BICD2Q8TD16 824 aa11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 SNX21Q969T3 373 aa11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 PHF20Q9BVI0 1012 aa11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 DDX20Q9UHI6 824 aaKnown RBP11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 FAM184BQ9ULE4 1060 aa11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 MYH9P35579 1960 aaKnown RBP11.05□□□□□ -0.64
RABGGTA-221ENST00000561055 ALPK3Q96L96 1907 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 M0R2N6 131 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 PPFIA3O75145 1194 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 XBP1P17861 261 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 HMGN5P82970 282 aaKnown RBP11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 CUL4AQ13619 759 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 NPY5RQ15761 445 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 CCDC144BQ3MJ40 725 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 PCNX4Q63HM2 1172 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 FCHSD1Q86WN1 690 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 U2AF1L4Q8WU68 220 aaKnown RBP11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 CRYGNQ8WXF5 182 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 AIFM3Q96NN9 605 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 VPS54Q9P1Q0 977 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 OGDHLQ9ULD0 1010 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 PCDHA6Q9UN73 950 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 Q9Y3F1 56 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 PCDHA8Q9Y5H6 950 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 KAT6AQ92794 2004 aa11.04□□□□□ -0.64
RABGGTA-221ENST00000561055 POTEFA5A3E0 1075 aa11.03□□□□□ -0.64
RABGGTA-221ENST00000561055 CCDC85CA6NKD9 419 aa11.03□□□□□ -0.64
RABGGTA-221ENST00000561055 SPDYE3A6NKU9 549 aa11.03□□□□□ -0.64
RABGGTA-221ENST00000561055 JAK2O60674 1132 aa11.03□□□□□ -0.64
RABGGTA-221ENST00000561055 DUSP11O75319 330 aaKnown RBP11.03□□□□□ -0.64
RABGGTA-221ENST00000561055 RGS20O76081 388 aa11.03□□□□□ -0.64
RABGGTA-221ENST00000561055 TGFB3P10600 412 aa11.03□□□□□ -0.64
RABGGTA-221ENST00000561055 EIF2AK2P19525 551 aaKnown RBP11.03□□□□□ -0.64
RABGGTA-221ENST00000561055 NLRP5P59047 1200 aa11.03□□□□□ -0.64
RABGGTA-221ENST00000561055 MRPS9P82933 396 aaKnown RBP11.03□□□□□ -0.64
RABGGTA-221ENST00000561055 UBE2SQ16763 222 aa11.03□□□□□ -0.64
RABGGTA-221ENST00000561055 CCDC62Q6P9F0 684 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms