RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 GUCY2DQ02846 1103 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 PFKFB3Q16875 520 aaPredicted RBP13.71□□□□□ -0.21
LDLR-205ENST00000557933 MIIPQ5JXC2 388 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 RC3H1Q5TC82 1133 aaKnown RBP13.71□□□□□ -0.21
LDLR-205ENST00000557933 RCSD1Q6JBY9 416 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 CCDC43Q96MW1 224 aaKnown RBP13.71□□□□□ -0.21
LDLR-205ENST00000557933 OSBPL9Q96SU4 736 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 UBA5Q9GZZ9 404 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 RMND1Q9NWS8 449 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 BIN2Q9UBW5 565 aaPredicted RBP13.71□□□□□ -0.21
LDLR-205ENST00000557933 MKRN1Q9UHC7 482 aaKnown RBP13.71□□□□□ -0.21
LDLR-205ENST00000557933 PCDHA13Q9Y5I0 950 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 EBAG9O00559 213 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 SRGNP10124 158 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 CCDC152Q4G0S7 254 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 CABP7Q86V35 215 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 CLEC10AQ8IUN9 316 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 DDX60Q8IY21 1712 aaKnown RBP13.71□□□□□ -0.21
LDLR-205ENST00000557933 PPM1EQ8WY54 764 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 ZIM3Q96PE6 472 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 SNX12Q9UMY4 172 aa13.71□□□□□ -0.21
LDLR-205ENST00000557933 POTEMA6NI47 508 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 DNM2P50570 870 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 TRIM14Q14142 442 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 ERFEQ4G0M1 354 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 CHADLQ6NUI6 762 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 ZNF34Q8IZ26 560 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 KIAA0895Q8NCT3 520 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 P2RX5Q93086 422 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.7□□□□□ -0.22
LDLR-205ENST00000557933 SEMA6BQ9H3T3 888 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 EPB41L5Q9HCM4 733 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 IL17RBQ9NRM6 502 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 PCDHA6Q9UN73 950 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 PCDHA8Q9Y5H6 950 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 TAF1P21675 1872 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 EP400Q96L91 3159 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 LOC102724428A0A0B4J2F2 783 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 AARSP49588 968 aaKnown RBP eCLIP13.7□□□□□ -0.22
LDLR-205ENST00000557933 SIK1P57059 783 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 RNF187Q5TA31 235 aaPredicted RBP13.7□□□□□ -0.22
LDLR-205ENST00000557933 C8orf74Q6P047 294 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 DDX42Q86XP3 938 aaKnown RBP eCLIP13.7□□□□□ -0.221e-7■■■□□ 15
LDLR-205ENST00000557933 NELFCDQ8IXH7 590 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 PACSIN1Q9BY11 444 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 TTYH3Q9C0H2 523 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 FAM184BQ9ULE4 1060 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 CAPN7Q9Y6W3 813 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 H0YHG0 523 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 MAGEA1P43355 309 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 VAV2P52735 878 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 CKAP4Q07065 602 aaKnown RBP13.7□□□□□ -0.22
LDLR-205ENST00000557933 HAUS3Q68CZ6 603 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 USP17L2Q6R6M4 530 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 FAM84BQ96KN1 310 aaPredicted RBP13.7□□□□□ -0.22
LDLR-205ENST00000557933 NUDT12Q9BQG2 462 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 ZHX3Q9H4I2 956 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 BCCIPQ9P287 314 aaKnown RBP eCLIP13.7□□□□□ -0.22
LDLR-205ENST00000557933 GRIN2DO15399 1336 aa13.7□□□□□ -0.22
LDLR-205ENST00000557933 GRIK5Q16478 980 aa13.69□□□□□ -0.22
LDLR-205ENST00000557933 FAM196AQ6ZSG2 479 aa13.69□□□□□ -0.22
LDLR-205ENST00000557933 CACNA2D4Q7Z3S7 1137 aa13.69□□□□□ -0.22
LDLR-205ENST00000557933 POTEDQ86YR6 584 aa13.69□□□□□ -0.22
LDLR-205ENST00000557933 GIMAP8Q8ND71 665 aaPredicted RBP13.69□□□□□ -0.22
LDLR-205ENST00000557933 AENQ8WTP8 325 aaKnown RBP13.69□□□□□ -0.22
LDLR-205ENST00000557933 KRT12Q99456 494 aa13.69□□□□□ -0.22
LDLR-205ENST00000557933 TRIM9Q9C026 710 aa13.69□□□□□ -0.22
LDLR-205ENST00000557933 RBM28Q9NW13 759 aaKnown RBP13.69□□□□□ -0.22
LDLR-205ENST00000557933 QSER1Q2KHR3 1735 aa13.69□□□□□ -0.22
LDLR-205ENST00000557933 CHD4Q14839 1912 aa13.69□□□□□ -0.22
LDLR-205ENST00000557933 RAD21O60216 631 aa13.69□□□□□ -0.22
LDLR-205ENST00000557933 TACC1O75410 805 aa13.69□□□□□ -0.22
LDLR-205ENST00000557933 CRKLP46109 303 aaKnown RBP13.69□□□□□ -0.22
LDLR-205ENST00000557933 ZBED6P86452 979 aa13.69□□□□□ -0.22
LDLR-205ENST00000557933 EHHADHQ08426 723 aa13.69□□□□□ -0.22
LDLR-205ENST00000557933 NNTQ13423 1086 aa13.69□□□□□ -0.22
LDLR-205ENST00000557933 MKNK2Q9HBH9 465 aa13.69□□□□□ -0.22
LDLR-205ENST00000557933 BMP15O95972 392 aa13.68□□□□□ -0.22
LDLR-205ENST00000557933 SLURP2P0DP57 97 aa13.68□□□□□ -0.22
LDLR-205ENST00000557933 EEF1GP26641 437 aaKnown RBP13.68□□□□□ -0.22
LDLR-205ENST00000557933 LONP1P36776 959 aaKnown RBP13.68□□□□□ -0.22
LDLR-205ENST00000557933 NAPAP54920 295 aa13.68□□□□□ -0.22
LDLR-205ENST00000557933 TUBB2AQ13885 445 aa13.68□□□□□ -0.22
LDLR-205ENST00000557933 MAATS1Q7Z4T9 603 aa13.68□□□□□ -0.22
LDLR-205ENST00000557933 RNPC3Q96LT9 517 aaKnown RBP13.68□□□□□ -0.22
LDLR-205ENST00000557933 TUBB2BQ9BVA1 445 aa13.68□□□□□ -0.22
LDLR-205ENST00000557933 FGFBP2Q9BYJ0 223 aa13.68□□□□□ -0.22
LDLR-205ENST00000557933 PPANQ9NQ55 473 aaKnown RBP13.68□□□□□ -0.22
LDLR-205ENST00000557933 PCDHA4Q9UN74 947 aa13.68□□□□□ -0.22
LDLR-205ENST00000557933 MYH3P11055 1940 aa13.68□□□□□ -0.22
LDLR-205ENST00000557933 CAVIN4Q5BKX8 364 aa13.68□□□□□ -0.22
LDLR-205ENST00000557933 MAPKAPK5Q8IW41 473 aa13.68□□□□□ -0.22
LDLR-205ENST00000557933 HEXIM1O94992 359 aaKnown RBP13.67□□□□□ -0.22
LDLR-205ENST00000557933 HLTFQ14527 1009 aaKnown RBP eCLIP13.67□□□□□ -0.22
LDLR-205ENST00000557933 MEA1Q16626 185 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 INTS5Q6P9B9 1019 aaKnown RBP13.67□□□□□ -0.22
LDLR-205ENST00000557933 NSUN4Q96CB9 384 aaKnown RBP13.67□□□□□ -0.22
LDLR-205ENST00000557933 SH2D4AQ9H788 454 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 EFCC1Q9HA90 598 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 CCDC87Q9NVE4 849 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms