RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 ABCB11O95342 1321 aa12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 PRUNE2Q8WUY3 3088 aa12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 DHX16O60231 1041 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 PARP1P09874 1014 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 SUPT20HL2P0C7V6 817 aa12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 TXNP10599 105 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 PBX2P40425 430 aa12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 TTLL4Q14679 1199 aa12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 OTOP2Q7RTS6 562 aa12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 RPUSD2Q8IZ73 545 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 UBAC1Q9BSL1 405 aa12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 MAF1Q9H063 256 aa12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 WNT8AQ9H1J5 351 aa12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 MSRAQ9UJ68 235 aa12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 SCN5AQ14524 2016 aa12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 MYH7BA7E2Y1 1941 aa12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 VCANP13611 3396 aa12.94□□□□□ -0.34
CCDC88C-213ENST00000557455 A6NJR5 290 aa12.93□□□□□ -0.34
CCDC88C-213ENST00000557455 KPNA6O60684 536 aa12.93□□□□□ -0.34
CCDC88C-213ENST00000557455 RAB30Q15771 203 aa12.93□□□□□ -0.34
CCDC88C-213ENST00000557455 QRICH1Q2TAL8 776 aa12.93□□□□□ -0.34
CCDC88C-213ENST00000557455 FAM47CQ5HY64 1035 aa12.93□□□□□ -0.34
CCDC88C-213ENST00000557455 IFIT1BQ5T764 474 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-213ENST00000557455 MCF2L2Q86YR7 1114 aa12.93□□□□□ -0.34
CCDC88C-213ENST00000557455 TBC1D5Q92609 795 aa12.93□□□□□ -0.34
CCDC88C-213ENST00000557455 COPS5Q92905 334 aa12.93□□□□□ -0.34
CCDC88C-213ENST00000557455 SCLYQ96I15 445 aa12.93□□□□□ -0.34
CCDC88C-213ENST00000557455 VAT1LQ9HCJ6 419 aa12.93□□□□□ -0.34
CCDC88C-213ENST00000557455 TRMT13Q9NUP7 481 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-213ENST00000557455 CXXC1Q9P0U4 656 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-213ENST00000557455 MRPL11Q9Y3B7 192 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-213ENST00000557455 CYP2C9P11712 490 aa12.92□□□□□ -0.34
CCDC88C-213ENST00000557455 NBPF20Q3BBV1 942 aa12.92□□□□□ -0.34
CCDC88C-213ENST00000557455 SEPT14Q6ZU15 432 aa12.92□□□□□ -0.34
CCDC88C-213ENST00000557455 FBXO11Q86XK2 927 aa12.92□□□□□ -0.34
CCDC88C-213ENST00000557455 SYTL5Q8TDW5 730 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-213ENST00000557455 NSUN6Q8TEA1 469 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-213ENST00000557455 TAAR1Q96RJ0 339 aa12.92□□□□□ -0.34
CCDC88C-213ENST00000557455 GAS2L1Q99501 681 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-213ENST00000557455 JMJD4Q9H9V9 463 aa12.92□□□□□ -0.34
CCDC88C-213ENST00000557455 TRIP12Q14669 1992 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-213ENST00000557455 TANC1Q9C0D5 1861 aa12.91□□□□□ -0.34
CCDC88C-213ENST00000557455 ZBBXA8MT70 800 aa12.91□□□□□ -0.34
CCDC88C-213ENST00000557455 ARIH2O95376 493 aa12.91□□□□□ -0.34
CCDC88C-213ENST00000557455 PFKMP08237 780 aa12.91□□□□□ -0.34
CCDC88C-213ENST00000557455 PTPN11Q06124 597 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-213ENST00000557455 STXBP2Q15833 593 aa12.91□□□□□ -0.34
CCDC88C-213ENST00000557455 TTC22Q5TAA0 569 aa12.91□□□□□ -0.34
CCDC88C-213ENST00000557455 NFRKBQ6P4R8 1299 aa12.91□□□□□ -0.34
CCDC88C-213ENST00000557455 PPP1R13LQ8WUF5 828 aa12.91□□□□□ -0.34
CCDC88C-213ENST00000557455 IWS1Q96ST2 819 aa12.91□□□□□ -0.34
CCDC88C-213ENST00000557455 RMDN3Q96TC7 470 aa12.91□□□□□ -0.34
CCDC88C-213ENST00000557455 IL25Q9H293 177 aa12.91□□□□□ -0.34
CCDC88C-213ENST00000557455 COL20A1Q9P218 1284 aa12.91□□□□□ -0.34
CCDC88C-213ENST00000557455 SLC4A7Q9Y6M7 1214 aa12.91□□□□□ -0.34
CCDC88C-213ENST00000557455 SPTBN5Q9NRC6 3674 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 CFBP00751 764 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 GH1P01241 217 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 PDE4AP27815 886 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 CHMP4BP1P59074 171 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 TRDNQ13061 729 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 LY6KQ17RY6 165 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 ARHGEF16Q5VV41 709 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 CCDC62Q6P9F0 684 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 DEFB128Q7Z7B8 93 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 STAG2Q8N3U4 1231 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 RUFY2Q8WXA3 655 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 AMNQ9BXJ7 453 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 NKX2-4Q9H2Z4 354 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 PRDM12Q9H4Q4 367 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 SLC28A3Q9HAS3 691 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 NOD1Q9Y239 953 aa12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 SUPT16HQ9Y5B9 1047 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-213ENST00000557455 CHD9Q3L8U1 2897 aa12.89□□□□□ -0.35
CCDC88C-213ENST00000557455 KLRF2D3W0D1 207 aa12.89□□□□□ -0.35
CCDC88C-213ENST00000557455 MMP3P08254 477 aa12.89□□□□□ -0.35
CCDC88C-213ENST00000557455 GSPT1P15170 499 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-213ENST00000557455 EIF2AK2P19525 551 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-213ENST00000557455 SEC23AQ15436 765 aa12.89□□□□□ -0.35
CCDC88C-213ENST00000557455 CYB5R4Q7L1T6 521 aa12.89□□□□□ -0.35
CCDC88C-213ENST00000557455 CHST3Q7LGC8 479 aa12.89□□□□□ -0.35
CCDC88C-213ENST00000557455 USP38Q8NB14 1042 aa12.89□□□□□ -0.35
CCDC88C-213ENST00000557455 RETREG2Q8NC44 543 aa12.89□□□□□ -0.35
CCDC88C-213ENST00000557455 AFG1LQ8WV93 481 aa12.89□□□□□ -0.35
CCDC88C-213ENST00000557455 VWCEQ96DN2 955 aa12.89□□□□□ -0.35
CCDC88C-213ENST00000557455 PXMP2Q9NR77 195 aa12.89□□□□□ -0.35
CCDC88C-213ENST00000557455 YBX2Q9Y2T7 364 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-213ENST00000557455 BAZ2BQ9UIF8 2168 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 PITPNM1O00562 1244 aa12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 EIF3JO75822 258 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 NR3C2P08235 984 aa12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 IQCF3P0C7M6 154 aa12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 ACTN1P12814 892 aa12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 ATP2A2P16615 1042 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 CASTP20810 708 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 RFC2P35250 354 aa12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 HSD17B4P51659 736 aa12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 RABGGTBP53611 331 aa12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 ARHGAP1Q07960 439 aa12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 BFSP2Q13515 415 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms