RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 HSP90AA1P07900 732 aaKnown RBP14.69□□□□□ -0.06
SHMT2-227ENST00000557269 XRCC5P13010 732 aaKnown RBP14.69□□□□□ -0.06
SHMT2-227ENST00000557269 EIF2AK2P19525 551 aaKnown RBP14.69□□□□□ -0.06
SHMT2-227ENST00000557269 ANP32AP39687 249 aaKnown RBP14.69□□□□□ -0.06
SHMT2-227ENST00000557269 ALDH5A1P51649 535 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-227ENST00000557269 TRIM32Q13049 653 aa14.69□□□□□ -0.06
SHMT2-227ENST00000557269 NR5A1Q13285 461 aa14.69□□□□□ -0.06
SHMT2-227ENST00000557269 TRIM29Q14134 588 aa14.69□□□□□ -0.06
SHMT2-227ENST00000557269 EARS2Q5JPH6 523 aaKnown RBP14.69□□□□□ -0.06
SHMT2-227ENST00000557269 LARP1BQ659C4 914 aaKnown RBP14.69□□□□□ -0.06
SHMT2-227ENST00000557269 FAM177A1Q8N128 213 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-227ENST00000557269 REXO1Q8N1G1 1221 aaKnown RBP14.69□□□□□ -0.06
SHMT2-227ENST00000557269 RMDN3Q96TC7 470 aa14.69□□□□□ -0.06
SHMT2-227ENST00000557269 PLXNA1Q9UIW2 1896 aa14.69□□□□□ -0.06
SHMT2-227ENST00000557269 FAM205CA6NFA0 338 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 KIF28PB7ZC32 967 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 EDIL3O43854 480 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 SNAI1O95863 264 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-227ENST00000557269 SYT1P21579 422 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 CYP2C19P33261 490 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 KRT2P35908 639 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 PRMT2P55345 433 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 ARHGEF16Q5VV41 709 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 OLFML2BQ68BL8 750 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 GALNT17Q6IS24 598 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 MAMDC4Q6UXC1 1216 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 ZNF467Q7Z7K2 595 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-227ENST00000557269 DIS3L2Q8IYB7 885 aaKnown RBP14.68□□□□□ -0.06
SHMT2-227ENST00000557269 DNERQ8NFT8 737 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 RAET1EQ8TD07 263 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 BICD2Q8TD16 824 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 NSUN6Q8TEA1 469 aaKnown RBP14.68□□□□□ -0.06
SHMT2-227ENST00000557269 PDCD2LQ9BRP1 358 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 ANO3Q9BYT9 981 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 GLT8D2Q9H1C3 349 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 SLC5A4Q9NY91 659 aa14.68□□□□□ -0.06
SHMT2-227ENST00000557269 FRMPD4Q14CM0 1322 aa14.67□□□□□ -0.06
SHMT2-227ENST00000557269 SPDYE3A6NKU9 549 aa14.67□□□□□ -0.06
SHMT2-227ENST00000557269 EDNRBP24530 442 aa14.67□□□□□ -0.06
SHMT2-227ENST00000557269 AP3B2Q13367 1082 aa14.67□□□□□ -0.06
SHMT2-227ENST00000557269 PGM5Q15124 567 aa14.67□□□□□ -0.06
SHMT2-227ENST00000557269 PRAMEF19Q5SWL8 479 aa14.67□□□□□ -0.06
SHMT2-227ENST00000557269 MORC4Q8TE76 937 aa14.67□□□□□ -0.06
SHMT2-227ENST00000557269 CRYGNQ8WXF5 182 aa14.67□□□□□ -0.06
SHMT2-227ENST00000557269 TINF2Q9BSI4 451 aa14.67□□□□□ -0.06
SHMT2-227ENST00000557269 ADD3Q9UEY8 706 aaKnown RBP14.67□□□□□ -0.06
SHMT2-227ENST00000557269 KIF3AQ9Y496 699 aa14.67□□□□□ -0.06
SHMT2-227ENST00000557269 FOSP01100 380 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-227ENST00000557269 NR3C2P08235 984 aa14.66□□□□□ -0.06
SHMT2-227ENST00000557269 MYCLP12524 364 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-227ENST00000557269 MRPS9P82933 396 aaKnown RBP14.66□□□□□ -0.06
SHMT2-227ENST00000557269 PKP1Q13835 747 aa14.66□□□□□ -0.06
SHMT2-227ENST00000557269 ARMCX2Q7L311 632 aa14.66□□□□□ -0.06
SHMT2-227ENST00000557269 EEPD1Q7L9B9 569 aa14.66□□□□□ -0.06
SHMT2-227ENST00000557269 TEX2Q8IWB9 1127 aa14.66□□□□□ -0.06
SHMT2-227ENST00000557269 TRPV1Q8NER1 839 aa14.66□□□□□ -0.06
SHMT2-227ENST00000557269 PXYLP1Q8TE99 480 aa14.66□□□□□ -0.06
SHMT2-227ENST00000557269 SH3TC2Q8TF17 1288 aa14.66□□□□□ -0.06
SHMT2-227ENST00000557269 KATNBL1Q9H079 304 aa14.66□□□□□ -0.06
SHMT2-227ENST00000557269 ASB14A6NK59 587 aa14.65□□□□□ -0.06
SHMT2-227ENST00000557269 H3BQV1 296 aa14.65□□□□□ -0.06
SHMT2-227ENST00000557269 GRK4P32298 578 aa14.65□□□□□ -0.06
SHMT2-227ENST00000557269 SREBF1P36956 1147 aa14.65□□□□□ -0.06
SHMT2-227ENST00000557269 IFFO2Q5TF58 517 aa14.65□□□□□ -0.06
SHMT2-227ENST00000557269 PIK3AP1Q6ZUJ8 805 aa14.65□□□□□ -0.06
SHMT2-227ENST00000557269 VSIG10LQ86VR7 867 aa14.65□□□□□ -0.06
SHMT2-227ENST00000557269 TBCKQ8TEA7 893 aa14.65□□□□□ -0.06
SHMT2-227ENST00000557269 IWS1Q96ST2 819 aa14.65□□□□□ -0.06
SHMT2-227ENST00000557269 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-227ENST00000557269 RTEL1Q9NZ71 1219 aa14.65□□□□□ -0.06
SHMT2-227ENST00000557269 MTMR6Q9Y217 621 aa14.65□□□□□ -0.06
SHMT2-227ENST00000557269 LRRC37A2A6NM11 1700 aa14.65□□□□□ -0.06
SHMT2-227ENST00000557269 SYNGAP1Q96PV0 1343 aa14.65□□□□□ -0.06
SHMT2-227ENST00000557269 VPS37CA5D8V6 355 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-227ENST00000557269 WNT7AO00755 349 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 RGS20O76081 388 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 INHAP05111 366 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 PDCP20941 246 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 U2AF2P26368 475 aaKnown RBP eCLIP14.64□□□□□ -0.07
SHMT2-227ENST00000557269 ARHGAP4P98171 946 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 CACNB2Q08289 660 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-227ENST00000557269 PDE4DQ08499 809 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 SAFBQ15424 915 aaKnown RBP eCLIP14.64□□□□□ -0.07
SHMT2-227ENST00000557269 INF2Q27J81 1249 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 TMEM63BQ5T3F8 832 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 PCNX4Q63HM2 1172 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 MCTP1Q6DN14 999 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 FBXO46Q6PJ61 603 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-227ENST00000557269 KRT25Q7Z3Z0 450 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 FBXO16Q8IX29 292 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-227ENST00000557269 MSL3Q8N5Y2 521 aaKnown RBP14.64□□□□□ -0.07
SHMT2-227ENST00000557269 SLAIN1Q8ND83 568 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 CYP2W1Q8TAV3 490 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 FOXP1Q9H334 677 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-227ENST00000557269 BRMS1Q9HCU9 246 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 PDGFCQ9NRA1 345 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 MCM3APO60318 1980 aa14.64□□□□□ -0.07
SHMT2-227ENST00000557269 CCDC194A0A1B0GVG4 234 aa14.63□□□□□ -0.07
SHMT2-227ENST00000557269 STX6O43752 255 aa14.63□□□□□ -0.07
SHMT2-227ENST00000557269 HMGCRP04035 888 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms