RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 ZSWIM8A7E2V4 1837 aa16.07■□□□□ 0.16
VIPAS39-208ENST00000556412 VPS37CA5D8V6 355 aaPredicted RBP16.07■□□□□ 0.16
VIPAS39-208ENST00000556412 XRCC5P13010 732 aaKnown RBP16.07■□□□□ 0.16
VIPAS39-208ENST00000556412 NPY5RQ15761 445 aa16.07■□□□□ 0.16
VIPAS39-208ENST00000556412 MCTP1Q6DN14 999 aa16.07■□□□□ 0.16
VIPAS39-208ENST00000556412 FGD4Q96M96 766 aa16.07■□□□□ 0.16
VIPAS39-208ENST00000556412 ANO3Q9BYT9 981 aa16.07■□□□□ 0.16
VIPAS39-208ENST00000556412 PXMP2Q9NR77 195 aa16.07■□□□□ 0.16
VIPAS39-208ENST00000556412 FLRT1Q9NZU1 646 aa16.07■□□□□ 0.16
VIPAS39-208ENST00000556412 DIS3Q9Y2L1 958 aaKnown RBP16.07■□□□□ 0.16
VIPAS39-208ENST00000556412 ASTN1O14525 1302 aa16.07■□□□□ 0.16
VIPAS39-208ENST00000556412 BTBD18B2RXH4 712 aa16.06■□□□□ 0.16
VIPAS39-208ENST00000556412 MYCLP12524 364 aaPredicted RBP16.06■□□□□ 0.16
VIPAS39-208ENST00000556412 PDCP20941 246 aa16.06■□□□□ 0.16
VIPAS39-208ENST00000556412 CLK2P49760 499 aaKnown RBP16.06■□□□□ 0.16
VIPAS39-208ENST00000556412 PDE4DQ08499 809 aa16.06■□□□□ 0.16
VIPAS39-208ENST00000556412 NR5A1Q13285 461 aa16.06■□□□□ 0.16
VIPAS39-208ENST00000556412 AP3B2Q13367 1082 aa16.06■□□□□ 0.16
VIPAS39-208ENST00000556412 IRF5Q13568 498 aa16.06■□□□□ 0.16
VIPAS39-208ENST00000556412 DAGLBQ8NCG7 672 aa16.06■□□□□ 0.16
VIPAS39-208ENST00000556412 DNERQ8NFT8 737 aa16.06■□□□□ 0.16
VIPAS39-208ENST00000556412 TRIB2Q92519 343 aa16.06■□□□□ 0.16
VIPAS39-208ENST00000556412 MPHOSPH6Q99547 160 aaKnown RBP16.06■□□□□ 0.16
VIPAS39-208ENST00000556412 EHMT1Q9H9B1 1298 aa16.06■□□□□ 0.16
VIPAS39-208ENST00000556412 CCDC194A0A1B0GVG4 234 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 ASB14A6NK59 587 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 FOSP01100 380 aaPredicted RBP16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 CYP2C19P33261 490 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 ARMCX2Q7L311 632 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 EEPD1Q7L9B9 569 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 ZFP91Q96JP5 570 aaPredicted RBP16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 TINF2Q9BSI4 451 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 B4DLN1 442 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 SYT1P21579 422 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 PGM5Q15124 567 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 MFSD14CQ5VZR4 134 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 MCTP2Q6DN12 878 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 PIK3AP1Q6ZUJ8 805 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 IL31RAQ8NI17 732 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 SH3TC2Q8TF17 1288 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 PDCD2LQ9BRP1 358 aa16.05■□□□□ 0.16
VIPAS39-208ENST00000556412 NR3C2P08235 984 aa16.04■□□□□ 0.16
VIPAS39-208ENST00000556412 GRK4P32298 578 aa16.04■□□□□ 0.16
VIPAS39-208ENST00000556412 OLFML2BQ68BL8 750 aa16.04■□□□□ 0.16
VIPAS39-208ENST00000556412 KRT25Q7Z3Z0 450 aa16.04■□□□□ 0.16
VIPAS39-208ENST00000556412 ZNF467Q7Z7K2 595 aaPredicted RBP16.04■□□□□ 0.16
VIPAS39-208ENST00000556412 TEX2Q8IWB9 1127 aa16.04■□□□□ 0.16
VIPAS39-208ENST00000556412 TRMT44Q8IYL2 757 aaKnown RBP16.04■□□□□ 0.16
VIPAS39-208ENST00000556412 SLAIN1Q8ND83 568 aa16.04■□□□□ 0.16
VIPAS39-208ENST00000556412 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.04■□□□□ 0.16
VIPAS39-208ENST00000556412 MYCP01106 439 aaPredicted RBP16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 CCND2P30279 289 aa16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 TRIM32Q13049 653 aa16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 NONOQ15233 471 aaKnown RBP eCLIP16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 SLC9C1Q4G0N8 1177 aa16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 FBXO46Q6PJ61 603 aaPredicted RBP16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 ZHX1Q9UKY1 873 aaPredicted RBP16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 CNPY2Q9Y2B0 182 aa16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 RPTORQ8N122 1335 aa16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 M0R2N6 131 aa16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 HMGCRP04035 888 aa16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 STXBP2Q15833 593 aa16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 PKN2Q16513 984 aaKnown RBP16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 INF2Q27J81 1249 aa16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 PRAMEF19Q5SWL8 479 aa16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 FBXO16Q8IX29 292 aaPredicted RBP16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 PXYLP1Q8TE99 480 aa16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 TBCKQ8TEA7 893 aa16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 IWS1Q96ST2 819 aa16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 RTEL1Q9NZ71 1219 aa16.03■□□□□ 0.16
VIPAS39-208ENST00000556412 SYNGAP1Q96PV0 1343 aa16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 FAM205CA6NFA0 338 aa16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 KIF28PB7ZC32 967 aa16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 STX6O43752 255 aa16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 SNAI1O95863 264 aaPredicted RBP16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 INHAP05111 366 aa16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 ZNF76P36508 570 aa16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 ARHGAP4P98171 946 aa16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 EARS2Q5JPH6 523 aaKnown RBP16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 FOXD4L5Q5VV16 416 aaPredicted RBP16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 MAMDC4Q6UXC1 1216 aa16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 FERMT3Q86UX7 667 aa16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 MSL3Q8N5Y2 521 aaKnown RBP16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 FOXD4L4Q8WXT5 416 aaPredicted RBP16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 FOXP1Q9H334 677 aaPredicted RBP16.02■□□□□ 0.16
VIPAS39-208ENST00000556412 PLXNB2O15031 1838 aa16.01■□□□□ 0.15
VIPAS39-208ENST00000556412 PRKAR2AP13861 404 aaKnown RBP16.01■□□□□ 0.15
VIPAS39-208ENST00000556412 ATP2B1P20020 1258 aa16.01■□□□□ 0.15
VIPAS39-208ENST00000556412 EDNRBP24530 442 aa16.01■□□□□ 0.15
VIPAS39-208ENST00000556412 CNGA1P29973 690 aa16.01■□□□□ 0.15
VIPAS39-208ENST00000556412 SREBF1P36956 1147 aa16.01■□□□□ 0.15
VIPAS39-208ENST00000556412 ZNF236Q9UL36 1845 aa16.01■□□□□ 0.15
VIPAS39-208ENST00000556412 FRMPD4Q14CM0 1322 aa16.01■□□□□ 0.15
VIPAS39-208ENST00000556412 PCNX4Q63HM2 1172 aa16.01■□□□□ 0.15
VIPAS39-208ENST00000556412 SEPT14Q6ZU15 432 aa16.01■□□□□ 0.15
VIPAS39-208ENST00000556412 VSIG10LQ86VR7 867 aa16.01■□□□□ 0.15
VIPAS39-208ENST00000556412 NOSTRINQ8IVI9 506 aa16.01■□□□□ 0.15
VIPAS39-208ENST00000556412 TNFRSF25Q93038 417 aa16.01■□□□□ 0.15
VIPAS39-208ENST00000556412 MCOLN1Q9GZU1 580 aa16.01■□□□□ 0.15
VIPAS39-208ENST00000556412 LOC102724159A0A0B4J2E5 919 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms