RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 ANO3Q9BYT9 981 aa12.29□□□□□ -0.44
TDP1-211ENST00000555178 ZFYVE28Q9HCC9 887 aa12.29□□□□□ -0.44
TDP1-211ENST00000555178 ZCCHC17Q9NP64 241 aaKnown RBP12.29□□□□□ -0.44
TDP1-211ENST00000555178 TDP2O95551 362 aa12.28□□□□□ -0.44
TDP1-211ENST00000555178 GHRHRQ02643 423 aa12.28□□□□□ -0.44
TDP1-211ENST00000555178 ZNF396Q96N95 335 aaPredicted RBP12.28□□□□□ -0.44
TDP1-211ENST00000555178 RTEL1Q9NZ71 1219 aa12.28□□□□□ -0.44
TDP1-211ENST00000555178 EIF2AK2P19525 551 aaKnown RBP12.27□□□□□ -0.44
TDP1-211ENST00000555178 MARCKSP29966 332 aaPredicted RBP12.27□□□□□ -0.44
TDP1-211ENST00000555178 NASPP49321 788 aaPredicted RBP12.27□□□□□ -0.44
TDP1-211ENST00000555178 PTPAQ15257 358 aa12.27□□□□□ -0.44
TDP1-211ENST00000555178 ZNF174Q15697 407 aa12.27□□□□□ -0.44
TDP1-211ENST00000555178 GPR142Q7Z601 462 aa12.27□□□□□ -0.44
TDP1-211ENST00000555178 ANKRD35Q8N283 1001 aa12.27□□□□□ -0.44
TDP1-211ENST00000555178 TMEM87AQ8NBN3 555 aa12.27□□□□□ -0.44
TDP1-211ENST00000555178 LINC00301Q8NCQ3 95 aa12.27□□□□□ -0.44
TDP1-211ENST00000555178 CHST13Q8NET6 341 aa12.27□□□□□ -0.44
TDP1-211ENST00000555178 POLR3EQ9NVU0 708 aa12.27□□□□□ -0.44
TDP1-211ENST00000555178 DDX11L8A8MPP1 907 aa12.27□□□□□ -0.45
TDP1-211ENST00000555178 NONOQ15233 471 aaKnown RBP eCLIP12.27□□□□□ -0.45
TDP1-211ENST00000555178 RILPL1Q5EBL4 403 aa12.27□□□□□ -0.45
TDP1-211ENST00000555178 TTC38Q5R3I4 469 aa12.27□□□□□ -0.45
TDP1-211ENST00000555178 FAM177A1Q8N128 213 aaPredicted RBP12.27□□□□□ -0.45
TDP1-211ENST00000555178 BICD2Q8TD16 824 aa12.27□□□□□ -0.45
TDP1-211ENST00000555178 MMP19Q99542 508 aa12.27□□□□□ -0.45
TDP1-211ENST00000555178 CFAP45Q9UL16 551 aa12.27□□□□□ -0.45
TDP1-211ENST00000555178 DNAJC25-GNG10A0A024R161 153 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 GOLGA6L22H0YM25 854 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 SLC37A4O43826 429 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 SLC25A27O95847 323 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 PTGS1P23219 599 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 MCM7P33993 719 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 MRPS9P82933 396 aaKnown RBP12.26□□□□□ -0.45
TDP1-211ENST00000555178 GRIN1Q05586 938 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 STK38Q15208 465 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 LETM2Q2VYF4 491 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 TKFCQ3LXA3 575 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 KRT25Q7Z3Z0 450 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 FAM133AQ8N9E0 248 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 GPT2Q8TD30 523 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 TRIM47Q96LD4 638 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 SCAND2PQ9GZW5 306 aaPredicted RBP12.26□□□□□ -0.45
TDP1-211ENST00000555178 TMEM60Q9H2L4 133 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 RCOR1Q9UKL0 485 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 RPTORQ8N122 1335 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 FAM86B1E9PN63 330 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 FAM86B2P0C5J1 330 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 ADORA2AP29274 412 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 ARHGAP4P98171 946 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 TMEM63BQ5T3F8 832 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 SHCBP1Q8NEM2 672 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 NPLOC4Q8TAT6 608 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 RMDN3Q96TC7 470 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 MROH8Q9H579 483 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 BCAS3Q9H6U6 928 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 PXMP2Q9NR77 195 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.26□□□□□ -0.45
TDP1-211ENST00000555178 GABRQQ9UN88 632 aa12.26□□□□□ -0.45
TDP1-211ENST00000555178 WDR81Q562E7 1941 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 PTPREP23469 700 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 SREBF1P36956 1147 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 PGM5Q15124 567 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 MCF2L2Q86YR7 1114 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 C4orf32Q8N8J7 132 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 CLIC6Q96NY7 704 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 FLRT1Q9NZU1 646 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 NOL7Q9UMY1 257 aaKnown RBP12.25□□□□□ -0.45
TDP1-211ENST00000555178 PCDHA7Q9UN72 937 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 ELP1O95163 1332 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 ZNF236Q9UL36 1845 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 SPDYE3A6NKU9 549 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 SPTLC2O15270 562 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 CCNT1O60563 726 aaKnown RBP12.25□□□□□ -0.45
TDP1-211ENST00000555178 RGS20O76081 388 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 YEATS4O95619 227 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 FCER1AP12319 257 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 MYCLP12524 364 aaPredicted RBP12.25□□□□□ -0.45
TDP1-211ENST00000555178 ME1P48163 572 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 SLC39A14Q15043 492 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 IL17AQ16552 155 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 CCL14Q16627 93 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 ATL3Q6DD88 541 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 PLEKHH3Q7Z736 793 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 NEK8Q86SG6 692 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 CD99L2Q8TCZ2 262 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 GTF3C2Q8WUA4 911 aaPredicted RBP12.25□□□□□ -0.45
TDP1-211ENST00000555178 LENG9Q96B70 501 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 PDCD2LQ9BRP1 358 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 GJD2Q9UKL4 321 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 TELO2Q9Y4R8 837 aa12.25□□□□□ -0.45
TDP1-211ENST00000555178 FRMPD4Q14CM0 1322 aa12.24□□□□□ -0.45
TDP1-211ENST00000555178 POTEB2H3BUK9 544 aa12.24□□□□□ -0.45
TDP1-211ENST00000555178 ALDH1A1P00352 501 aa12.24□□□□□ -0.45
TDP1-211ENST00000555178 LACTBP83111 547 aaPredicted RBP12.24□□□□□ -0.45
TDP1-211ENST00000555178 ZNF792Q3KQV3 632 aa12.24□□□□□ -0.45
TDP1-211ENST00000555178 MORN1Q5T089 497 aa12.24□□□□□ -0.45
TDP1-211ENST00000555178 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.24□□□□□ -0.45
TDP1-211ENST00000555178 POTEDQ86YR6 584 aa12.24□□□□□ -0.45
TDP1-211ENST00000555178 IGLV3-22A0A075B6J6 115 aa12.23□□□□□ -0.45
TDP1-211ENST00000555178 ITGB5P18084 799 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms