RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 DEFB128Q7Z7B8 93 aa13.42□□□□□ -0.26
NEK3-204ENST00000552973 RPUSD2Q8IZ73 545 aaKnown RBP13.42□□□□□ -0.26
NEK3-204ENST00000552973 ENAHQ8N8S7 591 aaPredicted RBP13.42□□□□□ -0.26
NEK3-204ENST00000552973 DNERQ8NFT8 737 aa13.42□□□□□ -0.26
NEK3-204ENST00000552973 SYTL5Q8TDW5 730 aaPredicted RBP13.42□□□□□ -0.26
NEK3-204ENST00000552973 SCFD2Q8WU76 684 aa13.42□□□□□ -0.26
NEK3-204ENST00000552973 VWCEQ96DN2 955 aa13.42□□□□□ -0.26
NEK3-204ENST00000552973 GAS2L1Q99501 681 aaPredicted RBP13.42□□□□□ -0.26
NEK3-204ENST00000552973 SEZ6LQ9BYH1 1024 aa13.42□□□□□ -0.26
NEK3-204ENST00000552973 IL25Q9H293 177 aa13.42□□□□□ -0.26
NEK3-204ENST00000552973 MTIF3Q9H2K0 278 aaKnown RBP13.42□□□□□ -0.26
NEK3-204ENST00000552973 COL20A1Q9P218 1284 aa13.42□□□□□ -0.26
NEK3-204ENST00000552973 HIP1O00291 1037 aa13.41□□□□□ -0.26
NEK3-204ENST00000552973 NKRFO15226 690 aaKnown RBP eCLIP13.41□□□□□ -0.26
NEK3-204ENST00000552973 PARP1P09874 1014 aaKnown RBP13.41□□□□□ -0.26
NEK3-204ENST00000552973 SUPT20HL2P0C7V6 817 aa13.41□□□□□ -0.26
NEK3-204ENST00000552973 IGFBP4P22692 258 aa13.41□□□□□ -0.26
NEK3-204ENST00000552973 TTLL4Q14679 1199 aa13.41□□□□□ -0.26
NEK3-204ENST00000552973 RAB30Q15771 203 aa13.41□□□□□ -0.26
NEK3-204ENST00000552973 CCDC85BQ15834 202 aaPredicted RBP13.41□□□□□ -0.26
NEK3-204ENST00000552973 LY6KQ17RY6 165 aa13.41□□□□□ -0.26
NEK3-204ENST00000552973 QRICH1Q2TAL8 776 aa13.41□□□□□ -0.26
NEK3-204ENST00000552973 CCDC178Q5BJE1 867 aa13.41□□□□□ -0.26
NEK3-204ENST00000552973 CHST3Q7LGC8 479 aa13.41□□□□□ -0.26
NEK3-204ENST00000552973 RGS22Q8NE09 1264 aa13.41□□□□□ -0.26
NEK3-204ENST00000552973 ANKS1AQ92625 1134 aa13.41□□□□□ -0.26
NEK3-204ENST00000552973 DSCC1Q9BVC3 393 aa13.41□□□□□ -0.26
NEK3-204ENST00000552973 JMJD4Q9H9V9 463 aa13.41□□□□□ -0.26
NEK3-204ENST00000552973 SLC4A7Q9Y6M7 1214 aa13.41□□□□□ -0.26
NEK3-204ENST00000552973 ABCB11O95342 1321 aa13.4□□□□□ -0.26
NEK3-204ENST00000552973 A6NJR5 290 aa13.4□□□□□ -0.26
NEK3-204ENST00000552973 B4DLN1 442 aa13.4□□□□□ -0.26
NEK3-204ENST00000552973 RBAK-RBAKDNI3L0D1 243 aa13.4□□□□□ -0.26
NEK3-204ENST00000552973 MRPL12P52815 198 aaKnown RBP13.4□□□□□ -0.26
NEK3-204ENST00000552973 ADGRE1Q14246 886 aa13.4□□□□□ -0.26
NEK3-204ENST00000552973 ASPRV1Q53RT3 343 aa13.4□□□□□ -0.26
NEK3-204ENST00000552973 FBXO11Q86XK2 927 aa13.4□□□□□ -0.26
NEK3-204ENST00000552973 STAG2Q8N3U4 1231 aa13.4□□□□□ -0.26
NEK3-204ENST00000552973 AFG1LQ8WV93 481 aa13.4□□□□□ -0.26
NEK3-204ENST00000552973 UBAC1Q9BSL1 405 aa13.4□□□□□ -0.26
NEK3-204ENST00000552973 KRT23Q9C075 422 aa13.4□□□□□ -0.26
NEK3-204ENST00000552973 SLC28A3Q9HAS3 691 aa13.4□□□□□ -0.26
NEK3-204ENST00000552973 CTNNA3Q9UI47 895 aa13.4□□□□□ -0.26
NEK3-204ENST00000552973 RAD50Q92878 1312 aa13.39□□□□□ -0.27
NEK3-204ENST00000552973 CFBP00751 764 aa13.39□□□□□ -0.27
NEK3-204ENST00000552973 EIF2AK2P19525 551 aaKnown RBP13.39□□□□□ -0.27
NEK3-204ENST00000552973 PDE4AP27815 886 aa13.39□□□□□ -0.27
NEK3-204ENST00000552973 IFIT1BQ5T764 474 aaKnown RBP13.39□□□□□ -0.27
NEK3-204ENST00000552973 ARHGEF16Q5VV41 709 aa13.39□□□□□ -0.27
NEK3-204ENST00000552973 CCDC62Q6P9F0 684 aa13.39□□□□□ -0.27
NEK3-204ENST00000552973 CYB5R4Q7L1T6 521 aa13.39□□□□□ -0.27
NEK3-204ENST00000552973 MCF2L2Q86YR7 1114 aa13.39□□□□□ -0.27
NEK3-204ENST00000552973 RETREG2Q8NC44 543 aa13.39□□□□□ -0.27
NEK3-204ENST00000552973 NSUN6Q8TEA1 469 aaKnown RBP13.39□□□□□ -0.27
NEK3-204ENST00000552973 RMDN3Q96TC7 470 aa13.39□□□□□ -0.27
NEK3-204ENST00000552973 NOD1Q9Y239 953 aa13.39□□□□□ -0.27
NEK3-204ENST00000552973 MRPL11Q9Y3B7 192 aaKnown RBP13.39□□□□□ -0.27
NEK3-204ENST00000552973 LRRC37A2A6NM11 1700 aa13.39□□□□□ -0.27
NEK3-204ENST00000552973 SORBS3O60504 671 aa13.38□□□□□ -0.27
NEK3-204ENST00000552973 KPNA6O60684 536 aa13.38□□□□□ -0.27
NEK3-204ENST00000552973 GSPT1P15170 499 aaKnown RBP13.38□□□□□ -0.27
NEK3-204ENST00000552973 STXBP2Q15833 593 aa13.38□□□□□ -0.27
NEK3-204ENST00000552973 NFRKBQ6P4R8 1299 aa13.38□□□□□ -0.27
NEK3-204ENST00000552973 FTOQ9C0B1 505 aaKnown RBP eCLIP13.38□□□□□ -0.27
NEK3-204ENST00000552973 SUPT16HQ9Y5B9 1047 aaKnown RBP13.38□□□□□ -0.27
NEK3-204ENST00000552973 GH1P01241 217 aa13.37□□□□□ -0.27
NEK3-204ENST00000552973 MMP3P08254 477 aa13.37□□□□□ -0.27
NEK3-204ENST00000552973 IQCF3P0C7M6 154 aa13.37□□□□□ -0.27
NEK3-204ENST00000552973 ATP2A2P16615 1042 aaKnown RBP13.37□□□□□ -0.27
NEK3-204ENST00000552973 NT5C2P49902 561 aa13.37□□□□□ -0.27
NEK3-204ENST00000552973 ARHGAP1Q07960 439 aa13.37□□□□□ -0.27
NEK3-204ENST00000552973 MAPK8IP2Q13387 824 aaPredicted RBP13.37□□□□□ -0.27
NEK3-204ENST00000552973 SEC23AQ15436 765 aa13.37□□□□□ -0.27
NEK3-204ENST00000552973 PTGISQ16647 500 aa13.37□□□□□ -0.27
NEK3-204ENST00000552973 PPP2R2DQ66LE6 453 aa13.37□□□□□ -0.27
NEK3-204ENST00000552973 ZFP91Q96JP5 570 aaPredicted RBP13.37□□□□□ -0.27
NEK3-204ENST00000552973 CNNM2Q9H8M5 875 aa13.37□□□□□ -0.27
NEK3-204ENST00000552973 CERS4Q9HA82 394 aa13.37□□□□□ -0.27
NEK3-204ENST00000552973 DDX41Q9UJV9 622 aaKnown RBP13.37□□□□□ -0.27
NEK3-204ENST00000552973 LCTP09848 1927 aa13.37□□□□□ -0.27
NEK3-204ENST00000552973 KLRF2D3W0D1 207 aa13.36□□□□□ -0.27
NEK3-204ENST00000552973 RFXAPO00287 272 aa13.36□□□□□ -0.27
NEK3-204ENST00000552973 PPP1R11O60927 126 aaPredicted RBP13.36□□□□□ -0.27
NEK3-204ENST00000552973 NR3C2P08235 984 aa13.36□□□□□ -0.27
NEK3-204ENST00000552973 PFKMP08237 780 aa13.36□□□□□ -0.27
NEK3-204ENST00000552973 MYCLP12524 364 aaPredicted RBP13.36□□□□□ -0.27
NEK3-204ENST00000552973 CASTP20810 708 aaKnown RBP13.36□□□□□ -0.27
NEK3-204ENST00000552973 HOXA13P31271 388 aaPredicted RBP13.36□□□□□ -0.27
NEK3-204ENST00000552973 IRX6P78412 446 aaPredicted RBP13.36□□□□□ -0.27
NEK3-204ENST00000552973 PTH1RQ03431 593 aa13.36□□□□□ -0.27
NEK3-204ENST00000552973 PTPN11Q06124 597 aaPredicted RBP13.36□□□□□ -0.27
NEK3-204ENST00000552973 TTC22Q5TAA0 569 aa13.36□□□□□ -0.27
NEK3-204ENST00000552973 GDF6Q6KF10 455 aaPredicted RBP13.36□□□□□ -0.27
NEK3-204ENST00000552973 HOMER1Q86YM7 354 aa13.36□□□□□ -0.27
NEK3-204ENST00000552973 MICALL1Q8N3F8 863 aa13.36□□□□□ -0.27
NEK3-204ENST00000552973 KAT2BQ92831 832 aa13.36□□□□□ -0.27
NEK3-204ENST00000552973 IWS1Q96ST2 819 aa13.36□□□□□ -0.27
NEK3-204ENST00000552973 ALG1Q9BT22 464 aa13.36□□□□□ -0.27
NEK3-204ENST00000552973 AMNQ9BXJ7 453 aa13.36□□□□□ -0.27
NEK3-204ENST00000552973 SENP2Q9HC62 589 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms