RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 SELPP16109 830 aa17.23■□□□□ 0.35
VPS29-209ENST00000551655 LTBRP36941 435 aa17.23■□□□□ 0.35
VPS29-209ENST00000551655 ALDH5A1P51649 535 aaPredicted RBP17.23■□□□□ 0.35
VPS29-209ENST00000551655 IKQ13123 557 aaPredicted RBP17.23■□□□□ 0.35
VPS29-209ENST00000551655 GMCL1P1Q8NEA9 526 aa17.23■□□□□ 0.35
VPS29-209ENST00000551655 UPF3BQ9BZI7 483 aaKnown RBP17.23■□□□□ 0.35
VPS29-209ENST00000551655 ALG13Q9NP73 1137 aaKnown RBP17.23■□□□□ 0.35
VPS29-209ENST00000551655 PAG1Q9NWQ8 432 aa17.23■□□□□ 0.35
VPS29-209ENST00000551655 ARPP21Q9UBL0 812 aaPredicted RBP17.23■□□□□ 0.35
VPS29-209ENST00000551655 DCHS1Q96JQ0 3298 aa17.23■□□□□ 0.35
VPS29-209ENST00000551655 NLRC5Q86WI3 1866 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 CXCL10P02778 98 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 STAT2P52630 851 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 PTPN11Q06124 597 aaPredicted RBP17.22■□□□□ 0.35
VPS29-209ENST00000551655 DLX2Q07687 328 aaPredicted RBP17.22■□□□□ 0.35
VPS29-209ENST00000551655 TKFCQ3LXA3 575 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 EPC2Q52LR7 807 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 TIGD5Q53EQ6 642 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 RPAINQ86UA6 219 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 CAGE1Q8TC20 777 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 EDAQ92838 391 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 MKL1Q969V6 931 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 PBXIP1Q96AQ6 731 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 BOLA2Q9H3K6 86 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 MTMR4Q9NYA4 1195 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 FAM50BQ9Y247 325 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 PLXNA3P51805 1871 aa17.22■□□□□ 0.35
VPS29-209ENST00000551655 ABHD14A-ACY1A0A1B0GW23 586 aa17.21■□□□□ 0.35
VPS29-209ENST00000551655 RBM47A0AV96 593 aaKnown RBP17.21■□□□□ 0.35
VPS29-209ENST00000551655 TMEM221A6NGB7 291 aa17.21■□□□□ 0.35
VPS29-209ENST00000551655 M0R296 226 aa17.21■□□□□ 0.35
VPS29-209ENST00000551655 CKBP12277 381 aa17.21■□□□□ 0.35
VPS29-209ENST00000551655 BAATQ14032 418 aaPredicted RBP17.21■□□□□ 0.35
VPS29-209ENST00000551655 COL19A1Q14993 1142 aa17.21■□□□□ 0.35
VPS29-209ENST00000551655 PTPROQ16827 1216 aa17.21■□□□□ 0.35
VPS29-209ENST00000551655 CCDC155Q8N6L0 562 aa17.21■□□□□ 0.35
VPS29-209ENST00000551655 MICAL3Q7RTP6 2002 aa17.21■□□□□ 0.35
VPS29-209ENST00000551655 A6NJR5 290 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 MCCP23508 829 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 FOXK2Q01167 660 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 GPM6BQ13491 265 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 MBTPS1Q14703 1052 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 SMAD2Q15796 467 aaKnown RBP17.2■□□□□ 0.34
VPS29-209ENST00000551655 CEP85Q6P2H3 762 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 TRAF7Q6Q0C0 670 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 KCTD1Q719H9 257 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 RPAP2Q8IXW5 612 aaPredicted RBP17.2■□□□□ 0.34
VPS29-209ENST00000551655 MYOCDQ8IZQ8 938 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 RHPN1Q8TCX5 695 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 STAG1Q8WVM7 1258 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 WNT8BQ93098 351 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 NSUN3Q9H649 340 aaKnown RBP17.2■□□□□ 0.34
VPS29-209ENST00000551655 CTNNA3Q9UI47 895 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 CCPG1Q9ULG6 757 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 INSL6Q9Y581 213 aa17.2■□□□□ 0.34
VPS29-209ENST00000551655 NFIBO00712 420 aa17.19■□□□□ 0.34
VPS29-209ENST00000551655 MBTPS2O43462 519 aa17.19■□□□□ 0.34
VPS29-209ENST00000551655 ARIH2O95376 493 aa17.19■□□□□ 0.34
VPS29-209ENST00000551655 TTLL1O95922 423 aa17.19■□□□□ 0.34
VPS29-209ENST00000551655 FDX1P10109 184 aa17.19■□□□□ 0.34
VPS29-209ENST00000551655 VCPP55072 806 aaKnown RBP17.19■□□□□ 0.34
VPS29-209ENST00000551655 IKBKEQ14164 716 aa17.19■□□□□ 0.34
VPS29-209ENST00000551655 PPP2R5BQ15173 497 aa17.19■□□□□ 0.34
VPS29-209ENST00000551655 SBK1Q52WX2 424 aa17.19■□□□□ 0.34
VPS29-209ENST00000551655 BRDTQ58F21 947 aaPredicted RBP17.19■□□□□ 0.34
VPS29-209ENST00000551655 SLC30A10Q6XR72 485 aa17.19■□□□□ 0.34
VPS29-209ENST00000551655 TRIM67Q6ZTA4 783 aa17.19■□□□□ 0.34
VPS29-209ENST00000551655 BMP8AQ7Z5Y6 402 aa17.19■□□□□ 0.34
VPS29-209ENST00000551655 ERC1Q8IUD2 1116 aa17.19■□□□□ 0.34
VPS29-209ENST00000551655 SP7Q8TDD2 431 aaPredicted RBP17.19■□□□□ 0.34
VPS29-209ENST00000551655 PRR12Q9ULL5 1215 aa17.19■□□□□ 0.34
VPS29-209ENST00000551655 COL4A6Q14031 1691 aa17.18■□□□□ 0.34
VPS29-209ENST00000551655 GSG1L2A8MUP6 293 aa17.18■□□□□ 0.34
VPS29-209ENST00000551655 H3BNC9 293 aa17.18■□□□□ 0.34
VPS29-209ENST00000551655 CSPG5O95196 566 aa17.18■□□□□ 0.34
VPS29-209ENST00000551655 KCNA4P22459 653 aa17.18■□□□□ 0.34
VPS29-209ENST00000551655 GTF2F1P35269 517 aaKnown RBP eCLIP17.18■□□□□ 0.34
VPS29-209ENST00000551655 HTRA4P83105 476 aaPredicted RBP17.18■□□□□ 0.34
VPS29-209ENST00000551655 UBE3CQ15386 1083 aa17.18■□□□□ 0.34
VPS29-209ENST00000551655 FAM160B2Q86V87 743 aa17.18■□□□□ 0.34
VPS29-209ENST00000551655 CHURC1Q8WUH1 139 aa17.18■□□□□ 0.34
VPS29-209ENST00000551655 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.18■□□□□ 0.34
VPS29-209ENST00000551655 RAD50Q92878 1312 aa17.18■□□□□ 0.34
VPS29-209ENST00000551655 CACNA1HO95180 2353 aa17.17■□□□□ 0.34
VPS29-209ENST00000551655 KPNA6O60684 536 aa17.17■□□□□ 0.34
VPS29-209ENST00000551655 SLC1A4P43007 532 aa17.17■□□□□ 0.34
VPS29-209ENST00000551655 ZNF618Q5T7W0 954 aa17.17■□□□□ 0.34
VPS29-209ENST00000551655 SUGP1Q8IWZ8 645 aaKnown RBP17.17■□□□□ 0.34
VPS29-209ENST00000551655 ZNF444Q8N0Y2 327 aaPredicted RBP17.17■□□□□ 0.34
VPS29-209ENST00000551655 KAT2BQ92831 832 aa17.17■□□□□ 0.34
VPS29-209ENST00000551655 STRBPQ96SI9 672 aaKnown RBP17.17■□□□□ 0.34
VPS29-209ENST00000551655 EPB41L4AQ9HCS5 686 aaPredicted RBP17.17■□□□□ 0.34
VPS29-209ENST00000551655 MTMR7Q9Y216 660 aa17.17■□□□□ 0.34
VPS29-209ENST00000551655 DMDP11532 3685 aa17.17■□□□□ 0.34
VPS29-209ENST00000551655 VPS13AQ96RL7 3174 aa17.16■□□□□ 0.34
VPS29-209ENST00000551655 PTPDC1A2A3K4 754 aa17.16■□□□□ 0.34
VPS29-209ENST00000551655 STXBP3O00186 592 aa17.16■□□□□ 0.34
VPS29-209ENST00000551655 LINC01565O15544 149 aa17.16■□□□□ 0.34
VPS29-209ENST00000551655 TBX10O75333 385 aa17.16■□□□□ 0.34
VPS29-209ENST00000551655 LGR5O75473 907 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms