RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 CILPO75339 1184 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 PGRP06401 933 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 INSRRP14616 1297 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 VIPR1P32241 457 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 GALK1P51570 392 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 PLP2Q04941 152 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 PUM1Q14671 1186 aaKnown RBP eCLIP5.2□□□□□ -1.58
LIMA1-206ENST00000550611 OLFML2BQ68BL8 750 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 CNKSR3Q6P9H4 555 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 SYT8Q8NBV8 401 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 MZB1Q8WU39 189 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 ADAM7Q9H2U9 754 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 ADAM30Q9UKF2 790 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 ALS2Q96Q42 1657 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 SSH2Q76I76 1423 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 USP19O94966 1318 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 IFT172Q9UG01 1749 aa5.2□□□□□ -1.58
LIMA1-206ENST00000550611 RBM47A0AV96 593 aaKnown RBP5.19□□□□□ -1.58
LIMA1-206ENST00000550611 ABLIM1O14639 778 aa5.19□□□□□ -1.58
LIMA1-206ENST00000550611 FOXN1O15353 648 aa5.19□□□□□ -1.58
LIMA1-206ENST00000550611 EFEMP2O95967 443 aa5.19□□□□□ -1.58
LIMA1-206ENST00000550611 GCP02774 474 aa5.19□□□□□ -1.58
LIMA1-206ENST00000550611 RPS26P62854 115 aaKnown RBP5.19□□□□□ -1.58
LIMA1-206ENST00000550611 PDE4BQ07343 736 aa5.19□□□□□ -1.58
LIMA1-206ENST00000550611 DDB1Q16531 1140 aa5.19□□□□□ -1.58
LIMA1-206ENST00000550611 FAM129CQ86XR2 697 aa5.19□□□□□ -1.58
LIMA1-206ENST00000550611 TMEFF1Q8IYR6 380 aa5.19□□□□□ -1.58
LIMA1-206ENST00000550611 CYB5D2Q8WUJ1 264 aa5.19□□□□□ -1.58
LIMA1-206ENST00000550611 RNF141Q8WVD5 230 aa5.19□□□□□ -1.58
LIMA1-206ENST00000550611 BDH2Q9BUT1 245 aa5.19□□□□□ -1.58
LIMA1-206ENST00000550611 CDK19Q9BWU1 502 aa5.19□□□□□ -1.58
LIMA1-206ENST00000550611 WDR90Q96KV7 1748 aa5.19□□□□□ -1.58
LIMA1-206ENST00000550611 ACEP12821 1306 aa5.19□□□□□ -1.58
LIMA1-206ENST00000550611 SBF2Q86WG5 1849 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 BCL9O00512 1426 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 ZBTB7CA1YPR0 619 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 CCDC85CA6NKD9 419 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 SUV39H1O43463 412 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 NRDCO43847 1150 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 CDR1P51861 262 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 VMACQ2NL98 169 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 TTBK2Q6IQ55 1244 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 HHIPL2Q6UWX4 724 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 SMIM5Q71RC9 77 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 ABHD8Q96I13 439 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 FAM8A1Q9UBU6 413 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 ATP7BP35670 1465 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 PNPLA7Q6ZV29 1317 aa5.18□□□□□ -1.58
LIMA1-206ENST00000550611 AATKQ6ZMQ8 1374 aa5.17□□□□□ -1.58
LIMA1-206ENST00000550611 CRYBG1Q9Y4K1 1723 aa5.17□□□□□ -1.58
LIMA1-206ENST00000550611 PHRF1Q9P1Y6 1649 aaKnown RBP5.17□□□□□ -1.58
LIMA1-206ENST00000550611 KIR2DL1P43626 348 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-206ENST00000550611 KIR2DL2P43627 348 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-206ENST00000550611 CAP1Q01518 475 aa5.17□□□□□ -1.58
LIMA1-206ENST00000550611 ZFYVE27Q5T4F4 411 aa5.17□□□□□ -1.58
LIMA1-206ENST00000550611 SIRT2Q8IXJ6 389 aa5.17□□□□□ -1.58
LIMA1-206ENST00000550611 TP53I13Q8NBR0 393 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-206ENST00000550611 ACSF2Q96CM8 615 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-206ENST00000550611 GPR20Q99678 358 aa5.17□□□□□ -1.58
LIMA1-206ENST00000550611 DCTN4Q9UJW0 460 aa5.17□□□□□ -1.58
LIMA1-206ENST00000550611 PEAK1Q9H792 1746 aa5.17□□□□□ -1.58
LIMA1-206ENST00000550611 OVOS2A0A0G2JMS6 1433 aa5.16□□□□□ -1.58
LIMA1-206ENST00000550611 OVOS2A0A0J9YW53 1432 aa5.16□□□□□ -1.58
LIMA1-206ENST00000550611 OVOS2Q6IE36 1432 aa5.16□□□□□ -1.58
LIMA1-206ENST00000550611 AKAP8O43823 692 aaKnown RBP5.16□□□□□ -1.58
LIMA1-206ENST00000550611 PNLIPP16233 465 aa5.16□□□□□ -1.58
LIMA1-206ENST00000550611 RTP5Q14D33 572 aa5.16□□□□□ -1.58
LIMA1-206ENST00000550611 COL23A1Q86Y22 540 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-206ENST00000550611 IGDCC3Q8IVU1 814 aa5.16□□□□□ -1.58
LIMA1-206ENST00000550611 TFCP2L1Q9NZI6 479 aa5.16□□□□□ -1.58
LIMA1-206ENST00000550611 BRD4O60885 1362 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-206ENST00000550611 CRB1P82279 1406 aa5.15□□□□□ -1.58
LIMA1-206ENST00000550611 COL5A2P05997 1499 aaPredicted RBP5.15□□□□□ -1.58
LIMA1-206ENST00000550611 LRRN2O75325 713 aa5.15□□□□□ -1.59
LIMA1-206ENST00000550611 RGS19P49795 217 aa5.15□□□□□ -1.59
LIMA1-206ENST00000550611 LBX1P52954 281 aa5.15□□□□□ -1.59
LIMA1-206ENST00000550611 ERVFRD-1P60508 538 aa5.15□□□□□ -1.59
LIMA1-206ENST00000550611 FSTL1Q12841 308 aa5.15□□□□□ -1.59
LIMA1-206ENST00000550611 SLC14A2Q15849 920 aa5.15□□□□□ -1.59
LIMA1-206ENST00000550611 RNF111Q6ZNA4 994 aa5.15□□□□□ -1.59
LIMA1-206ENST00000550611 C16orf71Q8IYS4 520 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-206ENST00000550611 CRELD1Q96HD1 420 aa5.15□□□□□ -1.59
LIMA1-206ENST00000550611 MAP6Q96JE9 813 aa5.15□□□□□ -1.59
LIMA1-206ENST00000550611 PWWP2AQ96N64 755 aa5.15□□□□□ -1.59
LIMA1-206ENST00000550611 ASPNQ9BXN1 380 aa5.15□□□□□ -1.59
LIMA1-206ENST00000550611 C12orf49Q9H741 205 aa5.15□□□□□ -1.59
LIMA1-206ENST00000550611 PALD1Q9ULE6 856 aa5.15□□□□□ -1.59
LIMA1-206ENST00000550611 LMO7Q8WWI1 1683 aa5.15□□□□□ -1.59
LIMA1-206ENST00000550611 SHISA3A0PJX4 238 aa5.14□□□□□ -1.59
LIMA1-206ENST00000550611 K7ESM1 405 aa5.14□□□□□ -1.59
LIMA1-206ENST00000550611 PRICKLE3O43900 615 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-206ENST00000550611 USP2O75604 605 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-206ENST00000550611 USP17L7P0C7H9 530 aa5.14□□□□□ -1.59
LIMA1-206ENST00000550611 LMNB1P20700 586 aa5.14□□□□□ -1.59
LIMA1-206ENST00000550611 SEPT6Q14141 434 aa5.14□□□□□ -1.59
LIMA1-206ENST00000550611 ALG1LQ6GMV1 187 aa5.14□□□□□ -1.59
LIMA1-206ENST00000550611 ARHGEF25Q86VW2 580 aa5.14□□□□□ -1.59
LIMA1-206ENST00000550611 LDHDQ86WU2 507 aa5.14□□□□□ -1.59
LIMA1-206ENST00000550611 ENOX1Q8TC92 643 aaKnown RBP5.14□□□□□ -1.59
LIMA1-206ENST00000550611 SPG7Q9UQ90 795 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms