RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 DIS3Q9Y2L1 958 aaKnown RBP24.27■■□□□ 1.48
VPS29-206ENST00000549578 PCDHA8Q9Y5H6 950 aa24.27■■□□□ 1.48
VPS29-206ENST00000549578 M0R2N6 131 aa24.26■■□□□ 1.47
VPS29-206ENST00000549578 XRCC5P13010 732 aaKnown RBP24.26■■□□□ 1.47
VPS29-206ENST00000549578 EIF2AK2P19525 551 aaKnown RBP24.26■■□□□ 1.47
VPS29-206ENST00000549578 KRT2P35908 639 aa24.26■■□□□ 1.47
VPS29-206ENST00000549578 ALDH5A1P51649 535 aaPredicted RBP24.26■■□□□ 1.47
VPS29-206ENST00000549578 PRMT2P55345 433 aa24.26■■□□□ 1.47
VPS29-206ENST00000549578 UBXN2AP68543 259 aa24.26■■□□□ 1.47
VPS29-206ENST00000549578 NR5A1Q13285 461 aa24.26■■□□□ 1.47
VPS29-206ENST00000549578 IRF5Q13568 498 aa24.26■■□□□ 1.47
VPS29-206ENST00000549578 ARHGEF16Q5VV41 709 aa24.26■■□□□ 1.47
VPS29-206ENST00000549578 TEX2Q8IWB9 1127 aa24.26■■□□□ 1.47
VPS29-206ENST00000549578 PXMP2Q9NR77 195 aa24.26■■□□□ 1.47
VPS29-206ENST00000549578 PTCH2Q9Y6C5 1203 aa24.26■■□□□ 1.47
VPS29-206ENST00000549578 BTBD18B2RXH4 712 aa24.25■■□□□ 1.47
VPS29-206ENST00000549578 H3BQV1 296 aa24.25■■□□□ 1.47
VPS29-206ENST00000549578 AP3B2Q13367 1082 aa24.25■■□□□ 1.47
VPS29-206ENST00000549578 IFFO2Q5TF58 517 aa24.25■■□□□ 1.47
VPS29-206ENST00000549578 DNERQ8NFT8 737 aa24.25■■□□□ 1.47
VPS29-206ENST00000549578 NSUN6Q8TEA1 469 aaKnown RBP24.25■■□□□ 1.47
VPS29-206ENST00000549578 ANO3Q9BYT9 981 aa24.25■■□□□ 1.47
VPS29-206ENST00000549578 BRMS1Q9HCU9 246 aa24.25■■□□□ 1.47
VPS29-206ENST00000549578 PRDM10Q9NQV6 1147 aa24.25■■□□□ 1.47
VPS29-206ENST00000549578 PTPN22Q9Y2R2 807 aa24.25■■□□□ 1.47
VPS29-206ENST00000549578 ELNP15502 786 aa24.25■■□□□ 1.47
VPS29-206ENST00000549578 PDCP20941 246 aa24.25■■□□□ 1.47
VPS29-206ENST00000549578 SYT1P21579 422 aa24.25■■□□□ 1.47
VPS29-206ENST00000549578 SAFBQ15424 915 aaKnown RBP eCLIP24.25■■□□□ 1.47
VPS29-206ENST00000549578 ZNF467Q7Z7K2 595 aaPredicted RBP24.25■■□□□ 1.47
VPS29-206ENST00000549578 TRIB2Q92519 343 aa24.25■■□□□ 1.47
VPS29-206ENST00000549578 ADCY3O60266 1144 aa24.24■■□□□ 1.47
VPS29-206ENST00000549578 FOSP01100 380 aaPredicted RBP24.24■■□□□ 1.47
VPS29-206ENST00000549578 IL31RAQ8NI17 732 aa24.24■■□□□ 1.47
VPS29-206ENST00000549578 PDCD2LQ9BRP1 358 aa24.24■■□□□ 1.47
VPS29-206ENST00000549578 MCM3APO60318 1980 aa24.23■■□□□ 1.47
VPS29-206ENST00000549578 FRMPD4Q14CM0 1322 aa24.23■■□□□ 1.47
VPS29-206ENST00000549578 RPTORQ8N122 1335 aa24.23■■□□□ 1.47
VPS29-206ENST00000549578 VPS37CA5D8V6 355 aaPredicted RBP24.23■■□□□ 1.47
VPS29-206ENST00000549578 PGM5Q15124 567 aa24.23■■□□□ 1.47
VPS29-206ENST00000549578 TNFRSF25Q93038 417 aa24.23■■□□□ 1.47
VPS29-206ENST00000549578 EARS2Q5JPH6 523 aaKnown RBP24.22■■□□□ 1.47
VPS29-206ENST00000549578 OLFML2BQ68BL8 750 aa24.22■■□□□ 1.47
VPS29-206ENST00000549578 MCTP2Q6DN12 878 aa24.22■■□□□ 1.47
VPS29-206ENST00000549578 ARMCX2Q7L311 632 aa24.22■■□□□ 1.47
VPS29-206ENST00000549578 TINF2Q9BSI4 451 aa24.22■■□□□ 1.47
VPS29-206ENST00000549578 CENPFP49454 3210 aa24.22■■□□□ 1.47
VPS29-206ENST00000549578 FAM205CA6NFA0 338 aa24.21■■□□□ 1.47
VPS29-206ENST00000549578 ASB14A6NK59 587 aa24.21■■□□□ 1.47
VPS29-206ENST00000549578 KIF28PB7ZC32 967 aa24.21■■□□□ 1.47
VPS29-206ENST00000549578 EDNRBP24530 442 aa24.21■■□□□ 1.47
VPS29-206ENST00000549578 CYP2C19P33261 490 aa24.21■■□□□ 1.47
VPS29-206ENST00000549578 MCTP1Q6DN14 999 aa24.21■■□□□ 1.47
VPS29-206ENST00000549578 MAMDC4Q6UXC1 1216 aa24.21■■□□□ 1.47
VPS29-206ENST00000549578 ZFP91Q96JP5 570 aaPredicted RBP24.21■■□□□ 1.47
VPS29-206ENST00000549578 EHMT1Q9H9B1 1298 aa24.21■■□□□ 1.47
VPS29-206ENST00000549578 DAXXQ9UER7 740 aaPredicted RBP24.21■■□□□ 1.47
VPS29-206ENST00000549578 LRRC37A2A6NM11 1700 aa24.21■■□□□ 1.47
VPS29-206ENST00000549578 CCDC194A0A1B0GVG4 234 aa24.2■■□□□ 1.47
VPS29-206ENST00000549578 IGHA2P01877 340 aa24.2■■□□□ 1.47
VPS29-206ENST00000549578 NR3C2P08235 984 aa24.2■■□□□ 1.47
VPS29-206ENST00000549578 MYCLP12524 364 aaPredicted RBP24.2■■□□□ 1.47
VPS29-206ENST00000549578 SREBF1P36956 1147 aa24.2■■□□□ 1.47
VPS29-206ENST00000549578 GNL2Q13823 731 aaKnown RBP24.2■■□□□ 1.47
VPS29-206ENST00000549578 PIK3AP1Q6ZUJ8 805 aa24.2■■□□□ 1.47
VPS29-206ENST00000549578 KRT25Q7Z3Z0 450 aa24.2■■□□□ 1.47
VPS29-206ENST00000549578 PXYLP1Q8TE99 480 aa24.2■■□□□ 1.47
VPS29-206ENST00000549578 IWS1Q96ST2 819 aa24.2■■□□□ 1.47
VPS29-206ENST00000549578 FOXP1Q9H334 677 aaPredicted RBP24.2■■□□□ 1.47
VPS29-206ENST00000549578 STX6O43752 255 aa24.2■■□□□ 1.46
VPS29-206ENST00000549578 PDE4DQ08499 809 aa24.2■■□□□ 1.46
VPS29-206ENST00000549578 TRIM32Q13049 653 aa24.2■■□□□ 1.46
VPS29-206ENST00000549578 TRMT44Q8IYL2 757 aaKnown RBP24.2■■□□□ 1.46
VPS29-206ENST00000549578 MSL3Q8N5Y2 521 aaKnown RBP24.2■■□□□ 1.46
VPS29-206ENST00000549578 SLAIN1Q8ND83 568 aa24.2■■□□□ 1.46
VPS29-206ENST00000549578 MORC4Q8TE76 937 aa24.2■■□□□ 1.46
VPS29-206ENST00000549578 MPHOSPH6Q99547 160 aaKnown RBP24.2■■□□□ 1.46
VPS29-206ENST00000549578 CDKN2AIPQ9NXV6 580 aaPredicted RBP24.2■■□□□ 1.46
VPS29-206ENST00000549578 MTMR6Q9Y217 621 aa24.2■■□□□ 1.46
VPS29-206ENST00000549578 SYNGAP1Q96PV0 1343 aa24.19■■□□□ 1.46
VPS29-206ENST00000549578 MYH7BA7E2Y1 1941 aa24.19■■□□□ 1.46
VPS29-206ENST00000549578 LOC102724159A0A0B4J2E5 919 aa24.19■■□□□ 1.46
VPS29-206ENST00000549578 SNAI1O95863 264 aaPredicted RBP24.19■■□□□ 1.46
VPS29-206ENST00000549578 GRK4P32298 578 aa24.19■■□□□ 1.46
VPS29-206ENST00000549578 ARHGAP4P98171 946 aa24.19■■□□□ 1.46
VPS29-206ENST00000549578 NONOQ15233 471 aaKnown RBP eCLIP24.19■■□□□ 1.46
VPS29-206ENST00000549578 PWP2Q15269 919 aaKnown RBP24.19■■□□□ 1.46
VPS29-206ENST00000549578 EEPD1Q7L9B9 569 aa24.19■■□□□ 1.46
VPS29-206ENST00000549578 TBCKQ8TEA7 893 aa24.19■■□□□ 1.46
VPS29-206ENST00000549578 B4DLN1 442 aa24.18■■□□□ 1.46
VPS29-206ENST00000549578 HMGCRP04035 888 aa24.18■■□□□ 1.46
VPS29-206ENST00000549578 CCND2P30279 289 aa24.18■■□□□ 1.46
VPS29-206ENST00000549578 MRPS9P82933 396 aaKnown RBP24.18■■□□□ 1.46
VPS29-206ENST00000549578 INF2Q27J81 1249 aa24.18■■□□□ 1.46
VPS29-206ENST00000549578 MFSD14CQ5VZR4 134 aa24.18■■□□□ 1.46
VPS29-206ENST00000549578 PCNX4Q63HM2 1172 aa24.18■■□□□ 1.46
VPS29-206ENST00000549578 FBXO46Q6PJ61 603 aaPredicted RBP24.18■■□□□ 1.46
VPS29-206ENST00000549578 VSIG10LQ86VR7 867 aa24.18■■□□□ 1.46
VPS29-206ENST00000549578 SH3TC2Q8TF17 1288 aa24.18■■□□□ 1.46
VPS29-206ENST00000549578 U2AF2P26368 475 aaKnown RBP eCLIP24.17■■□□□ 1.462e-6■■□□□ 11.9
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms