RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 FAM102BQ5T8I3 360 aa17.95■□□□□ 0.46
CUX1-213ENST00000549414 C12orf60Q5U649 245 aa17.95■□□□□ 0.46
CUX1-213ENST00000549414 INTS5Q6P9B9 1019 aaKnown RBP17.95■□□□□ 0.46
CUX1-213ENST00000549414 TMC4Q7Z404 712 aa17.95■□□□□ 0.46
CUX1-213ENST00000549414 SELENOSQ9BQE4 189 aa17.95■□□□□ 0.46
CUX1-213ENST00000549414 FBXO2Q9UK22 296 aaPredicted RBP17.95■□□□□ 0.46
CUX1-213ENST00000549414 K7ENM7 598 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 IRX3P78415 501 aaPredicted RBP17.94■□□□□ 0.46
CUX1-213ENST00000549414 TXNRD1Q16881 649 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 XKR9Q5GH70 373 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 WDR44Q5JSH3 913 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 TOGARAM2Q6ZUX3 1019 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 NBPF11Q86T75 865 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 ZNF579Q8NAF0 562 aaKnown RBP17.94■□□□□ 0.46
CUX1-213ENST00000549414 USP17L10C9JJH3 530 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 PRCPP42785 496 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 SEPT2Q15019 361 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 CFAP221Q4G0U5 840 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 ADAT2Q7Z6V5 191 aaKnown RBP17.94■□□□□ 0.46
CUX1-213ENST00000549414 TRIM58Q8NG06 486 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 CCDC114Q96M63 670 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 CDC23Q9UJX2 597 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 TCP11X2Q5H9J9 407 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 DAAM2Q86T65 1068 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 PNMA6FA0A0J9YX94 578 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 GNA14O95837 355 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 FOSP01100 380 aaPredicted RBP17.94■□□□□ 0.46
CUX1-213ENST00000549414 ACTN2P35609 894 aa17.94■□□□□ 0.46
CUX1-213ENST00000549414 MST1RQ04912 1400 aa17.93■□□□□ 0.46
CUX1-213ENST00000549414 KCNK3O14649 394 aa17.93■□□□□ 0.46
CUX1-213ENST00000549414 CRKP46108 304 aa17.93■□□□□ 0.46
CUX1-213ENST00000549414 FKBP3Q00688 224 aaKnown RBP17.93■□□□□ 0.46
CUX1-213ENST00000549414 WHAMMP3Q1A5X7 153 aa17.93■□□□□ 0.46
CUX1-213ENST00000549414 MAGEF1Q9HAY2 307 aa17.93■□□□□ 0.46
CUX1-213ENST00000549414 AKR1B1P15121 316 aa17.93■□□□□ 0.46
CUX1-213ENST00000549414 CXCR5P32302 372 aa17.93■□□□□ 0.46
CUX1-213ENST00000549414 GJD4Q96KN9 370 aaPredicted RBP17.93■□□□□ 0.46
CUX1-213ENST00000549414 HSPA1LP34931 641 aa17.93■□□□□ 0.46
CUX1-213ENST00000549414 ARHGEF16Q5VV41 709 aa17.93■□□□□ 0.46
CUX1-213ENST00000549414 POTEDQ86YR6 584 aa17.93■□□□□ 0.46
CUX1-213ENST00000549414 CSADQ9Y600 493 aa17.93■□□□□ 0.46
CUX1-213ENST00000549414 ORC4O43929 436 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 GUCY2FP51841 1108 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 SEL1L2Q5TEA6 688 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 SULF1Q8IWU6 871 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 SMAP1Q8IYB5 467 aaPredicted RBP17.92■□□□□ 0.46
CUX1-213ENST00000549414 ZNF512BQ96KM6 892 aaPredicted RBP17.92■□□□□ 0.46
CUX1-213ENST00000549414 MTA3Q9BTC8 594 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 GOLGA6BA6NDN3 693 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 SFI1A8K8P3 1242 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 PRR5LQ6MZQ0 368 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 ARMCX5Q6P1M9 558 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 GBP6Q6ZN66 633 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 ANO3Q9BYT9 981 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 LARSQ9P2J5 1176 aaKnown RBP17.92■□□□□ 0.46
CUX1-213ENST00000549414 EHHADHQ08426 723 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 STRN3Q13033 797 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 GRM4Q14833 912 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 EXOC3L4Q17RC7 722 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 CCDC26Q8TAB7 109 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 MXD3Q9BW11 206 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 DHX36Q9H2U1 1008 aaKnown RBP17.92■□□□□ 0.46
CUX1-213ENST00000549414 STK17AQ9UEE5 414 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 NOP56O00567 594 aaKnown RBP17.92■□□□□ 0.46
CUX1-213ENST00000549414 MFAP3LO75121 409 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 TDP2O95551 362 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 PLA2G4BP0C869 781 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 TNFAIP1Q13829 316 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 MICALCLQ6ZW33 695 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 NUCKS1Q9H1E3 243 aaKnown RBP17.92■□□□□ 0.46
CUX1-213ENST00000549414 MTUS1Q9ULD2 1270 aa17.92■□□□□ 0.46
CUX1-213ENST00000549414 SF3A3Q12874 501 aaKnown RBP eCLIP17.91■□□□□ 0.46
CUX1-213ENST00000549414 MAN2A1Q16706 1144 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 SYDE2Q5VT97 1194 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 DDX41Q9UJV9 622 aaKnown RBP17.91■□□□□ 0.46
CUX1-213ENST00000549414 EXOC7Q9UPT5 735 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 USTQ9Y2C2 406 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 A0A1W2PRG0 241 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 GCFC2P16383 781 aaKnown RBP17.91■□□□□ 0.46
CUX1-213ENST00000549414 TNNI1P19237 187 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 EN1Q05925 392 aaPredicted RBP17.91■□□□□ 0.46
CUX1-213ENST00000549414 FMR1Q06787 632 aaKnown RBP eCLIP17.91■□□□□ 0.46
CUX1-213ENST00000549414 CALCOCO2Q13137 446 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 MASTLQ96GX5 879 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 TEKT3Q9BXF9 490 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 BHMT2Q9H2M3 363 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 STK24Q9Y6E0 443 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 RCAN1P53805 252 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 NAA35Q5VZE5 725 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 SRGAP1Q7Z6B7 1085 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 IFT20Q8IY31 132 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 BBXQ8WY36 941 aaPredicted RBP17.91■□□□□ 0.46
CUX1-213ENST00000549414 ZNF577Q9BSK1 485 aa17.91■□□□□ 0.46
CUX1-213ENST00000549414 NDUFA10O95299 355 aa17.9■□□□□ 0.46
CUX1-213ENST00000549414 DLATP10515 647 aaKnown RBP17.9■□□□□ 0.46
CUX1-213ENST00000549414 BCRP11274 1271 aa17.9■□□□□ 0.46
CUX1-213ENST00000549414 STAT2P52630 851 aa17.9■□□□□ 0.46
CUX1-213ENST00000549414 AFAP1L1Q8TED9 768 aa17.9■□□□□ 0.46
CUX1-213ENST00000549414 DDX12PQ92771 950 aa17.9■□□□□ 0.46
CUX1-213ENST00000549414 HPS3Q969F9 1004 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms