RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 RASGRP2Q7LDG7 609 aa15.13■□□□□ 0.01
SCAF11-208ENST00000546534 IFNL3Q8IZI9 196 aa15.13■□□□□ 0.01
SCAF11-208ENST00000546534 MTG1Q9BT17 334 aaPredicted RBP15.13■□□□□ 0.01
SCAF11-208ENST00000546534 GPHNQ9NQX3 736 aaPredicted RBP15.13■□□□□ 0.01
SCAF11-208ENST00000546534 CCPG1Q9ULG6 757 aa15.13■□□□□ 0.01
SCAF11-208ENST00000546534 PRR12Q9ULL5 1215 aa15.13■□□□□ 0.01
SCAF11-208ENST00000546534 TRANK1O15050 2925 aa15.13■□□□□ 0.01
SCAF11-208ENST00000546534 RBM47A0AV96 593 aaKnown RBP15.12■□□□□ 0.01
SCAF11-208ENST00000546534 PATL2C9JE40 543 aaKnown RBP15.12■□□□□ 0.01
SCAF11-208ENST00000546534 M0R2C6 588 aa15.12■□□□□ 0.01
SCAF11-208ENST00000546534 ALDH5A1P51649 535 aaPredicted RBP15.12■□□□□ 0.01
SCAF11-208ENST00000546534 OR6J1Q8NGC5 347 aa15.12■□□□□ 0.01
SCAF11-208ENST00000546534 LRRCC1Q9C099 1032 aa15.12■□□□□ 0.01
SCAF11-208ENST00000546534 LCHNA4D1U4 455 aa15.11■□□□□ 0.01
SCAF11-208ENST00000546534 ICAM1P05362 532 aa15.11■□□□□ 0.01
SCAF11-208ENST00000546534 PDE4BQ07343 736 aa15.11■□□□□ 0.01
SCAF11-208ENST00000546534 BAATQ14032 418 aaPredicted RBP15.11■□□□□ 0.01
SCAF11-208ENST00000546534 NFRKBQ6P4R8 1299 aa15.11■□□□□ 0.01
SCAF11-208ENST00000546534 TMCO2Q7Z6W1 182 aaPredicted RBP15.11■□□□□ 0.01
SCAF11-208ENST00000546534 ALYREFQ86V81 257 aaKnown RBP15.11■□□□□ 0.01
SCAF11-208ENST00000546534 GDPD5Q8WTR4 605 aa15.11■□□□□ 0.01
SCAF11-208ENST00000546534 ECHDC1Q9NTX5 307 aa15.11■□□□□ 0.01
SCAF11-208ENST00000546534 ADD3Q9UEY8 706 aaKnown RBP15.11■□□□□ 0.01
SCAF11-208ENST00000546534 DDX19BQ9UMR2 479 aa15.11■□□□□ 0.01
SCAF11-208ENST00000546534 LCTP09848 1927 aa15.1■□□□□ 0.01
SCAF11-208ENST00000546534 TTLL13PA6NNM8 815 aa15.1■□□□□ 0.01
SCAF11-208ENST00000546534 NFIBO00712 420 aa15.1■□□□□ 0.01
SCAF11-208ENST00000546534 BAIAP3O94812 1187 aa15.1■□□□□ 0.01
SCAF11-208ENST00000546534 MS4A1P11836 297 aa15.1■□□□□ 0.01
SCAF11-208ENST00000546534 BFSP2Q13515 415 aa15.1■□□□□ 0.01
SCAF11-208ENST00000546534 BMP2KQ9NSY1 1161 aaPredicted RBP15.1■□□□□ 0.01
SCAF11-208ENST00000546534 LMCD1Q9NZU5 365 aa15.1■□□□□ 0.01
SCAF11-208ENST00000546534 STX8Q9UNK0 236 aa15.1■□□□□ 0.01
SCAF11-208ENST00000546534 PIEZO1Q92508 2521 aa15.09■□□□□ 0.01
SCAF11-208ENST00000546534 A6NJR5 290 aa15.09■□□□□ 0.01
SCAF11-208ENST00000546534 NMT2O60551 498 aa15.09■□□□□ 0.01
SCAF11-208ENST00000546534 ZFYP08048 801 aaPredicted RBP15.09■□□□□ 0.01
SCAF11-208ENST00000546534 KCNJ6P48051 423 aa15.09■□□□□ 0.01
SCAF11-208ENST00000546534 WDR5P61964 334 aaKnown RBP15.09■□□□□ 0.01
SCAF11-208ENST00000546534 HNRNPUQ00839 825 aaKnown RBP eCLIP15.09■□□□□ 0.01
SCAF11-208ENST00000546534 PTPN11Q06124 597 aaPredicted RBP15.09■□□□□ 0.01
SCAF11-208ENST00000546534 PPARAQ07869 468 aa15.09■□□□□ 0.01
SCAF11-208ENST00000546534 BRDTQ58F21 947 aaPredicted RBP15.09■□□□□ 0.01
SCAF11-208ENST00000546534 TSHZ3Q63HK5 1081 aa15.09■□□□□ 0.01
SCAF11-208ENST00000546534 SPRYD3Q8NCJ5 442 aa15.09■□□□□ 0.01
SCAF11-208ENST00000546534 COPS5Q92905 334 aa15.09■□□□□ 0.01
SCAF11-208ENST00000546534 NACAP1Q9BZK3 213 aa15.09■□□□□ 0.01
SCAF11-208ENST00000546534 IL17RBQ9NRM6 502 aa15.09■□□□□ 0.01
SCAF11-208ENST00000546534 MTMR7Q9Y216 660 aa15.09■□□□□ 0.01
SCAF11-208ENST00000546534 NOD1Q9Y239 953 aa15.09■□□□□ 0.01
SCAF11-208ENST00000546534 MUC6Q6W4X9 2439 aa15.09■□□□□ 0.01
SCAF11-208ENST00000546534 SCN10AQ9Y5Y9 1956 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 LOC102724159A0A0B4J2E5 919 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 PTPDC1A2A3K4 754 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 KPNA6O60684 536 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 SLC3A2P08195 630 aaKnown RBP15.08■□□□□ 0
SCAF11-208ENST00000546534 SLC16A2P36021 539 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 CHMP4BP1P59074 171 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 GPNMBQ14956 572 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 PPP2R5BQ15173 497 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 PWP2Q15269 919 aaKnown RBP15.08■□□□□ 0
SCAF11-208ENST00000546534 PPP4R3BQ5MIZ7 849 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 TTBK2Q6IQ55 1244 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 SLC30A10Q6XR72 485 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 SEC62Q99442 399 aaKnown RBP15.08■□□□□ 0
SCAF11-208ENST00000546534 ZBED2Q9BTP6 218 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 RANBP17Q9H2T7 1088 aaKnown RBP15.08■□□□□ 0
SCAF11-208ENST00000546534 UBE2ZQ9H832 354 aaPredicted RBP15.08■□□□□ 0
SCAF11-208ENST00000546534 SUGCTQ9HAC7 445 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 INCENPQ9NQS7 918 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 MTUS1Q9ULD2 1270 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 RAD50Q92878 1312 aa15.08■□□□□ 0
SCAF11-208ENST00000546534 COL4A4P53420 1690 aaPredicted RBP15.07■□□□□ 0
SCAF11-208ENST00000546534 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.07■□□□□ 0
SCAF11-208ENST00000546534 PRR33A8MZF0 331 aa15.07■□□□□ 0
SCAF11-208ENST00000546534 NKRFO15226 690 aaKnown RBP eCLIP15.07■□□□□ 0
SCAF11-208ENST00000546534 CALML3P27482 149 aa15.07■□□□□ 0
SCAF11-208ENST00000546534 DEFB103AP81534 67 aa15.07■□□□□ 0
SCAF11-208ENST00000546534 PDE4DQ08499 809 aa15.07■□□□□ 0
SCAF11-208ENST00000546534 PTGISQ16647 500 aa15.07■□□□□ 0
SCAF11-208ENST00000546534 CCDC96Q2M329 555 aa15.07■□□□□ 0
SCAF11-208ENST00000546534 LRRFIP1Q32MZ4 808 aaKnown RBP15.07■□□□□ 0
SCAF11-208ENST00000546534 FAM178BQ8IXR5 827 aa15.07■□□□□ 0
SCAF11-208ENST00000546534 GJD3Q8N144 294 aa15.07■□□□□ 0
SCAF11-208ENST00000546534 CTAGE1Q96RT6 745 aa15.07■□□□□ 0
SCAF11-208ENST00000546534 NAPBQ9H115 298 aa15.07■□□□□ 0
SCAF11-208ENST00000546534 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.07■□□□□ 0
SCAF11-208ENST00000546534 TET1Q8NFU7 2136 aa15.07■□□□□ 0
SCAF11-208ENST00000546534 TANC1Q9C0D5 1861 aa15.06■□□□□ 0
SCAF11-208ENST00000546534 TSPY2A6NKD2 308 aa15.06■□□□□ 0
SCAF11-208ENST00000546534 TXNP10599 105 aaKnown RBP15.06■□□□□ 0
SCAF11-208ENST00000546534 LEXMQ3ZCV2 418 aa15.06■□□□□ 0
SCAF11-208ENST00000546534 CCDC155Q8N6L0 562 aa15.06■□□□□ 0
SCAF11-208ENST00000546534 AFAP1L1Q8TED9 768 aa15.06■□□□□ 0
SCAF11-208ENST00000546534 SCFD2Q8WU76 684 aa15.06■□□□□ 0
SCAF11-208ENST00000546534 CLEC4DQ8WXI8 215 aa15.06■□□□□ 0
SCAF11-208ENST00000546534 TGS1Q96RS0 853 aaKnown RBP15.06■□□□□ 0
SCAF11-208ENST00000546534 BRWD1Q9NSI6 2320 aa15.05■□□□□ 0
SCAF11-208ENST00000546534 LINC01553A4QN01 128 aa15.05■□□□□ -0
SCAF11-208ENST00000546534 RBAK-RBAKDNI3L0D1 243 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms