RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 CD320Q9NPF0 282 aa15.18■□□□□ 0.02
USP28-212ENST00000544750 HCN4Q9Y3Q4 1203 aa15.18■□□□□ 0.02
USP28-212ENST00000544750 MICAL3Q7RTP6 2002 aa15.17■□□□□ 0.02
USP28-212ENST00000544750 LCHNA4D1U4 455 aa15.17■□□□□ 0.02
USP28-212ENST00000544750 KIF28PB7ZC32 967 aa15.17■□□□□ 0.02
USP28-212ENST00000544750 FGRP09769 529 aa15.17■□□□□ 0.02
USP28-212ENST00000544750 CTDSPL2Q05D32 466 aa15.17■□□□□ 0.02
USP28-212ENST00000544750 FAM47CQ5HY64 1035 aa15.17■□□□□ 0.02
USP28-212ENST00000544750 SLC30A10Q6XR72 485 aa15.17■□□□□ 0.02
USP28-212ENST00000544750 COPS5Q92905 334 aa15.17■□□□□ 0.02
USP28-212ENST00000544750 LMCD1Q9NZU5 365 aa15.17■□□□□ 0.02
USP28-212ENST00000544750 TSPY2A6NKD2 308 aa15.16■□□□□ 0.02
USP28-212ENST00000544750 PI4K2BG5E9Z4 385 aa15.16■□□□□ 0.02
USP28-212ENST00000544750 KPNA6O60684 536 aa15.16■□□□□ 0.02
USP28-212ENST00000544750 SLC16A2P36021 539 aa15.16■□□□□ 0.02
USP28-212ENST00000544750 BFSP2Q13515 415 aa15.16■□□□□ 0.02
USP28-212ENST00000544750 LRRFIP1Q32MZ4 808 aaKnown RBP15.16■□□□□ 0.02
USP28-212ENST00000544750 C20orf194Q5TEA3 1177 aa15.16■□□□□ 0.02
USP28-212ENST00000544750 RETREG2Q8NC44 543 aa15.16■□□□□ 0.02
USP28-212ENST00000544750 PI4K2BQ8TCG2 481 aa15.16■□□□□ 0.02
USP28-212ENST00000544750 GPATCH3Q96I76 525 aa15.16■□□□□ 0.02
USP28-212ENST00000544750 GPHNQ9NQX3 736 aaPredicted RBP15.16■□□□□ 0.02
USP28-212ENST00000544750 ANAPC4Q9UJX5 808 aa15.16■□□□□ 0.02
USP28-212ENST00000544750 PTPDC1A2A3K4 754 aa15.15■□□□□ 0.02
USP28-212ENST00000544750 ARIH2O95376 493 aa15.15■□□□□ 0.02
USP28-212ENST00000544750 WDR5P61964 334 aaKnown RBP15.15■□□□□ 0.02
USP28-212ENST00000544750 RBL2Q08999 1139 aa15.15■□□□□ 0.02
USP28-212ENST00000544750 PPP2R5BQ15173 497 aa15.15■□□□□ 0.02
USP28-212ENST00000544750 BRDTQ58F21 947 aaPredicted RBP15.15■□□□□ 0.02
USP28-212ENST00000544750 SYDE2Q5VT97 1194 aa15.15■□□□□ 0.02
USP28-212ENST00000544750 SESTD1Q86VW0 696 aa15.15■□□□□ 0.02
USP28-212ENST00000544750 SCFD2Q8WU76 684 aa15.15■□□□□ 0.02
USP28-212ENST00000544750 FTOQ9C0B1 505 aaKnown RBP eCLIP15.15■□□□□ 0.02
USP28-212ENST00000544750 TTC41PQ6P2S7 1318 aa15.15■□□□□ 0.02
USP28-212ENST00000544750 NLRC5Q86WI3 1866 aa15.14■□□□□ 0.01
USP28-212ENST00000544750 ATG2AQ2TAZ0 1938 aa15.14■□□□□ 0.01
USP28-212ENST00000544750 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.14■□□□□ 0.01
USP28-212ENST00000544750 ORC4O43929 436 aa15.14■□□□□ 0.01
USP28-212ENST00000544750 CXCL10P02778 98 aa15.14■□□□□ 0.01
USP28-212ENST00000544750 RPS6P62753 249 aaKnown RBP15.14■□□□□ 0.01
USP28-212ENST00000544750 DEFB103AP81534 67 aa15.14■□□□□ 0.01
USP28-212ENST00000544750 CCDC96Q2M329 555 aa15.14■□□□□ 0.01
USP28-212ENST00000544750 TCTN1Q2MV58 587 aa15.14■□□□□ 0.01
USP28-212ENST00000544750 RNF207Q6ZRF8 634 aa15.14■□□□□ 0.01
USP28-212ENST00000544750 TMCO2Q7Z6W1 182 aaPredicted RBP15.14■□□□□ 0.01
USP28-212ENST00000544750 DNERQ8NFT8 737 aa15.14■□□□□ 0.01
USP28-212ENST00000544750 CAGE1Q8TC20 777 aa15.14■□□□□ 0.01
USP28-212ENST00000544750 AFAP1L1Q8TED9 768 aa15.14■□□□□ 0.01
USP28-212ENST00000544750 GDPD5Q8WTR4 605 aa15.14■□□□□ 0.01
USP28-212ENST00000544750 DHX38Q92620 1227 aaKnown RBP15.14■□□□□ 0.01
USP28-212ENST00000544750 MTMR7Q9Y216 660 aa15.14■□□□□ 0.01
USP28-212ENST00000544750 RAD50Q92878 1312 aa15.14■□□□□ 0.01
USP28-212ENST00000544750 FAM86C2PA6NEL3 165 aa15.13■□□□□ 0.01
USP28-212ENST00000544750 TXNP10599 105 aaKnown RBP15.13■□□□□ 0.01
USP28-212ENST00000544750 CALML3P27482 149 aa15.13■□□□□ 0.01
USP28-212ENST00000544750 KCNJ6P48051 423 aa15.13■□□□□ 0.01
USP28-212ENST00000544750 PDE4DQ08499 809 aa15.13■□□□□ 0.01
USP28-212ENST00000544750 PTGISQ16647 500 aa15.13■□□□□ 0.01
USP28-212ENST00000544750 GDF6Q6KF10 455 aaPredicted RBP15.13■□□□□ 0.01
USP28-212ENST00000544750 CCDC62Q6P9F0 684 aa15.13■□□□□ 0.01
USP28-212ENST00000544750 KAT2BQ92831 832 aa15.13■□□□□ 0.01
USP28-212ENST00000544750 TMEM47Q9BQJ4 181 aa15.13■□□□□ 0.01
USP28-212ENST00000544750 SUGCTQ9HAC7 445 aa15.13■□□□□ 0.01
USP28-212ENST00000544750 WDR19Q8NEZ3 1342 aa15.13■□□□□ 0.01
USP28-212ENST00000544750 RANBP6O60518 1105 aaKnown RBP15.12■□□□□ 0.01
USP28-212ENST00000544750 NBNO60934 754 aa15.12■□□□□ 0.01
USP28-212ENST00000544750 GJB5O95377 273 aa15.12■□□□□ 0.01
USP28-212ENST00000544750 PDHBP11177 359 aa15.12■□□□□ 0.01
USP28-212ENST00000544750 TOP1P11387 765 aaKnown RBP15.12■□□□□ 0.01
USP28-212ENST00000544750 ERVK-21P61565 698 aa15.12■□□□□ 0.01
USP28-212ENST00000544750 VPS53Q5VIR6 699 aa15.12■□□□□ 0.01
USP28-212ENST00000544750 OTUD7AQ8TE49 926 aaPredicted RBP15.12■□□□□ 0.01
USP28-212ENST00000544750 FSD1Q9BTV5 496 aa15.12■□□□□ 0.01
USP28-212ENST00000544750 GPCPD1Q9NPB8 672 aa15.12■□□□□ 0.01
USP28-212ENST00000544750 TCP11L1Q9NUJ3 509 aa15.12■□□□□ 0.01
USP28-212ENST00000544750 FRMPD2Q68DX3 1309 aaPredicted RBP15.12■□□□□ 0.01
USP28-212ENST00000544750 LINC01553A4QN01 128 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 MMP3P08254 477 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 SNHG28P0DPA3 235 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 SELPP16109 830 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 ALX1Q15699 326 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 CNKSR3Q6P9H4 555 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 TRAF7Q6Q0C0 670 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 FAM178BQ8IXR5 827 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 CCDC155Q8N6L0 562 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 RGS22Q8NE09 1264 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.11■□□□□ 0.01
USP28-212ENST00000544750 AFG1LQ8WV93 481 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 RAD9AQ99638 391 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 UBE2ZQ9H832 354 aaPredicted RBP15.11■□□□□ 0.01
USP28-212ENST00000544750 PNMA2Q9UL42 364 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 NOD1Q9Y239 953 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 MYO7AQ13402 2215 aa15.11■□□□□ 0.01
USP28-212ENST00000544750 ZNF318Q5VUA4 2279 aa15.1■□□□□ 0.01
USP28-212ENST00000544750 RBAK-RBAKDNI3L0D1 243 aa15.1■□□□□ 0.01
USP28-212ENST00000544750 PARNO95453 639 aaKnown RBP15.1■□□□□ 0.01
USP28-212ENST00000544750 CKBP12277 381 aa15.1■□□□□ 0.01
USP28-212ENST00000544750 ARHGAP1Q07960 439 aa15.1■□□□□ 0.01
USP28-212ENST00000544750 ZNF543Q08ER8 600 aa15.1■□□□□ 0.01
USP28-212ENST00000544750 MKRN4PQ13434 485 aaPredicted RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms