RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 BMP2KQ9NSY1 1161 aaPredicted RBP15.09■□□□□ 0.01
PTPN1-202ENST00000541713 KIF5AQ12840 1032 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 NFRKBQ6P4R8 1299 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 FOXR1Q6PIV2 292 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 DDX12PQ92771 950 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 MS4A14Q96JA4 679 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 KIAA1024Q9UPX6 916 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 SHANK3Q9BYB0 1731 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 MYH6P13533 1939 aa15.08■□□□□ 0.01
PTPN1-202ENST00000541713 ESYT3A0FGR9 886 aa15.08■□□□□ 0.01
PTPN1-202ENST00000541713 PALM3A6NDB9 673 aaPredicted RBP15.08■□□□□ 0.01
PTPN1-202ENST00000541713 LRRIQ3A6PVS8 624 aaPredicted RBP15.08■□□□□ 0.01
PTPN1-202ENST00000541713 PDE2AO00408 941 aaPredicted RBP15.08■□□□□ 0.01
PTPN1-202ENST00000541713 CHMP2AO43633 222 aa15.08■□□□□ 0.01
PTPN1-202ENST00000541713 GSTO1P78417 241 aa15.08■□□□□ 0.01
PTPN1-202ENST00000541713 ECM1Q16610 540 aa15.08■□□□□ 0.01
PTPN1-202ENST00000541713 NAA15Q9BXJ9 866 aaKnown RBP15.08■□□□□ 0.01
PTPN1-202ENST00000541713 HOXA13P31271 388 aaPredicted RBP15.08■□□□□ 0
PTPN1-202ENST00000541713 RCAN1P53805 252 aa15.08■□□□□ 0
PTPN1-202ENST00000541713 SF3A3Q12874 501 aaKnown RBP eCLIP15.08■□□□□ 07e-9■■□□□ 12
PTPN1-202ENST00000541713 CASP8Q14790 479 aa15.08■□□□□ 0
PTPN1-202ENST00000541713 SBK1Q52WX2 424 aa15.08■□□□□ 0
PTPN1-202ENST00000541713 KRT79Q5XKE5 535 aa15.08■□□□□ 0
PTPN1-202ENST00000541713 ARL6IP4Q66PJ3 421 aaKnown RBP15.08■□□□□ 0
PTPN1-202ENST00000541713 MAEAQ7L5Y9 396 aa15.08■□□□□ 0
PTPN1-202ENST00000541713 COG1Q8WTW3 980 aa15.08■□□□□ 0
PTPN1-202ENST00000541713 MMTAG2Q9BU76 263 aaKnown RBP15.08■□□□□ 0
PTPN1-202ENST00000541713 IFIH1Q9BYX4 1025 aaKnown RBP15.08■□□□□ 0
PTPN1-202ENST00000541713 CENPHQ9H3R5 247 aa15.08■□□□□ 0
PTPN1-202ENST00000541713 ERLIN1O75477 346 aa15.08■□□□□ 0
PTPN1-202ENST00000541713 EPS15P42566 896 aa15.08■□□□□ 0
PTPN1-202ENST00000541713 ADCY7P51828 1080 aa15.08■□□□□ 0
PTPN1-202ENST00000541713 HERC4Q5GLZ8 1057 aaPredicted RBP15.08■□□□□ 0
PTPN1-202ENST00000541713 TMED8Q6PL24 325 aaPredicted RBP15.08■□□□□ 0
PTPN1-202ENST00000541713 GIMAP8Q8ND71 665 aaPredicted RBP15.08■□□□□ 0
PTPN1-202ENST00000541713 ZC3H12CQ9C0D7 883 aaKnown RBP15.08■□□□□ 0
PTPN1-202ENST00000541713 CAPN6Q9Y6Q1 641 aa15.08■□□□□ 0
PTPN1-202ENST00000541713 SEMA3EO15041 775 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 KRT86O43790 486 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 MYBL2P10244 700 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 KRT25Q7Z3Z0 450 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 POTEB3A0JP26 581 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 LRRC53A6NM62 1247 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 POTECB2RU33 542 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 TUBB4AP04350 444 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 FGRP09769 529 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 CCNE1P24864 410 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 DNM2P50570 870 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 SLC10A5Q5PT55 438 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 CCDC181Q5TID7 509 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 POTEBQ6S5H4 581 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 C10orf67Q8IYJ2 551 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 LARP4BQ92615 738 aaKnown RBP15.07■□□□□ 0
PTPN1-202ENST00000541713 MTA3Q9BTC8 594 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 DAGLAQ9Y4D2 1042 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 FTCDO95954 541 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 CYLC1P35663 651 aaPredicted RBP15.07■□□□□ 0
PTPN1-202ENST00000541713 GRB10Q13322 594 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 RAPGEF1Q13905 1077 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 TMEM266Q2M3C6 531 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 BEND6Q5SZJ8 279 aaPredicted RBP15.07■□□□□ 0
PTPN1-202ENST00000541713 ADGRF4Q8IZF3 695 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 IFT81Q8WYA0 676 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 KBTBD4Q9NVX7 518 aa15.07■□□□□ 0
PTPN1-202ENST00000541713 RASSF10A6NK89 507 aa15.06■□□□□ 0
PTPN1-202ENST00000541713 PDHBP11177 359 aa15.06■□□□□ 0
PTPN1-202ENST00000541713 PABPC4Q13310 644 aaKnown RBP eCLIP15.06■□□□□ 01e-11■■■■□ 24.4
PTPN1-202ENST00000541713 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.06■□□□□ 0
PTPN1-202ENST00000541713 MKRN1Q9UHC7 482 aaKnown RBP15.06■□□□□ 0
PTPN1-202ENST00000541713 RSPH14Q9UHP6 348 aa15.06■□□□□ 0
PTPN1-202ENST00000541713 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.06■□□□□ 0
PTPN1-202ENST00000541713 CCDC66A2RUB6 948 aa15.06■□□□□ 0
PTPN1-202ENST00000541713 ZNF263O14978 683 aa15.06■□□□□ 0
PTPN1-202ENST00000541713 POLR2FP61218 127 aaKnown RBP15.06■□□□□ 0
PTPN1-202ENST00000541713 HDXQ7Z353 690 aa15.06■□□□□ 0
PTPN1-202ENST00000541713 TBC1D16Q8TBP0 767 aa15.06■□□□□ 0
PTPN1-202ENST00000541713 SH2D3AQ9BRG2 576 aa15.06■□□□□ 0
PTPN1-202ENST00000541713 NDST4Q9H3R1 872 aa15.06■□□□□ 0
PTPN1-202ENST00000541713 THRAP3Q9Y2W1 955 aaKnown RBP15.06■□□□□ 0
PTPN1-202ENST00000541713 TMCO5BA8MYB1 307 aa15.05■□□□□ 0
PTPN1-202ENST00000541713 GPS2Q13227 327 aa15.05■□□□□ 0
PTPN1-202ENST00000541713 PRR16Q569H4 304 aa15.05■□□□□ 0
PTPN1-202ENST00000541713 DCAF17Q5H9S7 520 aaPredicted RBP15.05■□□□□ 0
PTPN1-202ENST00000541713 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.05■□□□□ 0
PTPN1-202ENST00000541713 DDX25Q9UHL0 483 aaKnown RBP15.05■□□□□ 0
PTPN1-202ENST00000541713 PCDHA12Q9UN75 941 aa15.05■□□□□ 0
PTPN1-202ENST00000541713 DOT1LQ8TEK3 1739 aa15.05■□□□□ -0
PTPN1-202ENST00000541713 POTEFA5A3E0 1075 aa15.05■□□□□ -0
PTPN1-202ENST00000541713 CCDC151A5D8V7 595 aa15.05■□□□□ -0
PTPN1-202ENST00000541713 RHOBTB3O94955 611 aa15.05■□□□□ -0
PTPN1-202ENST00000541713 POTEIP0CG38 1075 aa15.05■□□□□ -0
PTPN1-202ENST00000541713 MAGEA1P43355 309 aa15.05■□□□□ -0
PTPN1-202ENST00000541713 LLGL1Q15334 1064 aa15.05■□□□□ -0
PTPN1-202ENST00000541713 POTEGQ6S5H5 508 aa15.05■□□□□ -0
PTPN1-202ENST00000541713 POTEEQ6S8J3 1075 aa15.05■□□□□ -0
PTPN1-202ENST00000541713 SECISBP2LQ93073 1101 aaKnown RBP15.05■□□□□ -0
PTPN1-202ENST00000541713 ZNF287Q9HBT7 754 aa15.05■□□□□ -0
PTPN1-202ENST00000541713 XIRP1Q702N8 1843 aaKnown RBP15.05■□□□□ -0
PTPN1-202ENST00000541713 ACTN1P12814 892 aa15.05■□□□□ -0
PTPN1-202ENST00000541713 ZSCAN26Q16670 478 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms