RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 AFG3L2Q9Y4W6 797 aa11.67□□□□□ -0.54
CHFR-219ENST00000541341 CLIC4Q9Y696 253 aa11.67□□□□□ -0.54
CHFR-219ENST00000541341 ZNF532Q9HCE3 1301 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 GPR75-ASB3A0A0A6YYF3 556 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 MYO1CO00159 1063 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 CXCL11O14625 94 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 ENTPD3O75355 529 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 FARP2O94887 1054 aaPredicted RBP11.66□□□□□ -0.54
CHFR-219ENST00000541341 TFRCP02786 760 aaKnown RBP11.66□□□□□ -0.54
CHFR-219ENST00000541341 GJB1P08034 283 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 FDPSP14324 419 aaKnown RBP11.66□□□□□ -0.54
CHFR-219ENST00000541341 CAPN2P17655 700 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 LIFRP42702 1097 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 NT5C2P49902 561 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 METAP2P50579 478 aaKnown RBP eCLIP11.66□□□□□ -0.54
CHFR-219ENST00000541341 PLCD1P51178 756 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 PPP4CP60510 307 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 PDE4CQ08493 712 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 POSTNQ15063 836 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 SPATA1Q5VX52 437 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 ZNF662Q6ZS27 426 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 STOX1Q6ZVD7 989 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 FASTKD5Q7L8L6 764 aaKnown RBP11.66□□□□□ -0.54
CHFR-219ENST00000541341 RASGRP2Q7LDG7 609 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 ADGRA1Q86SQ6 560 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 SRLQ86TD4 932 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 CERS3Q8IU89 383 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 MAGEB6Q8N7X4 407 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 DEFB118Q96PH6 123 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 GSDMAQ96QA5 445 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 IDI2Q9BXS1 227 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 NID2Q14112 1375 aa11.66□□□□□ -0.54
CHFR-219ENST00000541341 A0A1B0GTH6 734 aa11.65□□□□□ -0.54
CHFR-219ENST00000541341 POLR3DP05423 398 aaPredicted RBP11.65□□□□□ -0.54
CHFR-219ENST00000541341 ZNF18P17022 549 aa11.65□□□□□ -0.54
CHFR-219ENST00000541341 FECHP22830 423 aa11.65□□□□□ -0.54
CHFR-219ENST00000541341 PPP1R2P41236 205 aa11.65□□□□□ -0.54
CHFR-219ENST00000541341 LMAN1P49257 510 aa11.65□□□□□ -0.54
CHFR-219ENST00000541341 SETQ01105 290 aaPredicted RBP11.65□□□□□ -0.54
CHFR-219ENST00000541341 SSRP1Q08945 709 aaKnown RBP11.65□□□□□ -0.54
CHFR-219ENST00000541341 RRP1BQ14684 758 aaKnown RBP11.65□□□□□ -0.54
CHFR-219ENST00000541341 NR1I3Q14994 352 aa11.65□□□□□ -0.54
CHFR-219ENST00000541341 ALX1Q15699 326 aa11.65□□□□□ -0.54
CHFR-219ENST00000541341 CYP26C1Q6V0L0 522 aa11.65□□□□□ -0.54
CHFR-219ENST00000541341 SGMS1Q86VZ5 419 aa11.65□□□□□ -0.54
CHFR-219ENST00000541341 MB21D2Q8IYB1 491 aaPredicted RBP11.65□□□□□ -0.54
CHFR-219ENST00000541341 SLAIN1Q8ND83 568 aa11.65□□□□□ -0.54
CHFR-219ENST00000541341 DIS3LQ8TF46 1054 aaKnown RBP11.65□□□□□ -0.54
CHFR-219ENST00000541341 FERMT2Q96AC1 680 aa11.65□□□□□ -0.54
CHFR-219ENST00000541341 NAPGQ99747 312 aaPredicted RBP11.65□□□□□ -0.54
CHFR-219ENST00000541341 RIOK1Q9BRS2 568 aaKnown RBP11.65□□□□□ -0.54
CHFR-219ENST00000541341 KRT23Q9C075 422 aa11.65□□□□□ -0.54
CHFR-219ENST00000541341 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.65□□□□□ -0.54
CHFR-219ENST00000541341 RMND1Q9NWS8 449 aa11.65□□□□□ -0.54
CHFR-219ENST00000541341 RRP15Q9Y3B9 282 aaKnown RBP11.65□□□□□ -0.54
CHFR-219ENST00000541341 ZBTB43O43298 467 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 PPFIA4O75335 1185 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 IPO7O95373 1038 aaKnown RBP11.64□□□□□ -0.55
CHFR-219ENST00000541341 SGPL1O95470 568 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 CHGBP05060 677 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 CYP7A1P22680 504 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 SARSP49591 514 aaKnown RBP11.64□□□□□ -0.55
CHFR-219ENST00000541341 HMGCS2P54868 508 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 RHBDL3P58872 404 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 KRT83P78385 493 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 TRIM32Q13049 653 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 SPP2Q13103 211 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 MORC3Q14149 939 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 SHROOM1Q2M3G4 852 aaPredicted RBP11.64□□□□□ -0.55
CHFR-219ENST00000541341 TTC31Q49AM3 519 aaPredicted RBP11.64□□□□□ -0.55
CHFR-219ENST00000541341 DNAJC21Q5F1R6 531 aaKnown RBP11.64□□□□□ -0.55
CHFR-219ENST00000541341 TMEM139Q8IV31 216 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 TC2NQ8N9U0 490 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 NKX2-3Q8TAU0 364 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 OSBP2Q969R2 916 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 KIFC2Q96AC6 838 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 HTATIP2Q9BUP3 242 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 PUS7LQ9H0K6 701 aaKnown RBP11.64□□□□□ -0.55
CHFR-219ENST00000541341 FANCLQ9NW38 375 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 L1RE1Q9UN81 338 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 NFE2L3Q9Y4A8 694 aa11.64□□□□□ -0.55
CHFR-219ENST00000541341 RANBP2P49792 3224 aaKnown RBP11.64□□□□□ -0.55
CHFR-219ENST00000541341 COL2A1P02458 1487 aaPredicted RBP11.63□□□□□ -0.55
CHFR-219ENST00000541341 ERICH2A1L162 156 aa11.63□□□□□ -0.55
CHFR-219ENST00000541341 BIN1O00499 593 aa11.63□□□□□ -0.55
CHFR-219ENST00000541341 CTNND1O60716 968 aaKnown RBP11.63□□□□□ -0.55
CHFR-219ENST00000541341 GNAT2P19087 354 aa11.63□□□□□ -0.55
CHFR-219ENST00000541341 PTPREP23469 700 aa11.63□□□□□ -0.55
CHFR-219ENST00000541341 AARSP49588 968 aaKnown RBP eCLIP11.63□□□□□ -0.55
CHFR-219ENST00000541341 PTPAQ15257 358 aa11.63□□□□□ -0.55
CHFR-219ENST00000541341 BEND6Q5SZJ8 279 aaPredicted RBP11.63□□□□□ -0.55
CHFR-219ENST00000541341 KRT40Q6A162 431 aa11.63□□□□□ -0.55
CHFR-219ENST00000541341 UBE2Q1Q7Z7E8 422 aa11.63□□□□□ -0.55
CHFR-219ENST00000541341 POTEDQ86YR6 584 aa11.63□□□□□ -0.55
CHFR-219ENST00000541341 SH3RF3Q8TEJ3 882 aaPredicted RBP11.63□□□□□ -0.55
CHFR-219ENST00000541341 PAWRQ96IZ0 340 aaKnown RBP11.63□□□□□ -0.55
CHFR-219ENST00000541341 TRIM34Q9BYJ4 488 aa11.63□□□□□ -0.55
CHFR-219ENST00000541341 HAUS4Q9H6D7 363 aa11.63□□□□□ -0.55
CHFR-219ENST00000541341 PCDHA5Q9Y5H7 936 aa11.63□□□□□ -0.55
CHFR-219ENST00000541341 SRPRBQ9Y5M8 271 aaKnown RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms