RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 ASCC2Q9H1I8 757 aaPredicted RBP4.1□□□□□ -1.75
CD44-234ENST00000531873 GPR27Q9NS67 375 aa4.1□□□□□ -1.75
CD44-234ENST00000531873 CLEC1BQ9P126 229 aa4.1□□□□□ -1.75
CD44-234ENST00000531873 PCDHA8Q9Y5H6 950 aa4.1□□□□□ -1.75
CD44-234ENST00000531873 EID1Q9Y6B2 187 aa4.1□□□□□ -1.75
CD44-234ENST00000531873 CBX4O00257 560 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 NEMP1O14524 444 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 F13BP05160 661 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 CKMP06732 381 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 LTBRP36941 435 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 GUCY1A3Q02108 690 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 DSG1Q02413 1049 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 MCL1Q07820 350 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 TTF1Q15361 905 aaPredicted RBP4.09□□□□□ -1.75
CD44-234ENST00000531873 INF2Q27J81 1249 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 GAB4Q2WGN9 574 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 CFAP100Q494V2 611 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 ZNF648Q5T619 568 aaPredicted RBP4.09□□□□□ -1.75
CD44-234ENST00000531873 CCDC181Q5TID7 509 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 E4F1Q66K89 784 aaPredicted RBP4.09□□□□□ -1.75
CD44-234ENST00000531873 KRTAP5-3Q6L8H2 238 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 LBX2Q6XYB7 198 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 TSPYL5Q86VY4 417 aaPredicted RBP4.09□□□□□ -1.75
CD44-234ENST00000531873 ANKLE2Q86XL3 938 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 USHBP1Q8N6Y0 703 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 FAM181AQ8N9Y4 354 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.09□□□□□ -1.75
CD44-234ENST00000531873 WDR66Q8TBY9 1149 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 MFSD14AQ96MC6 490 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 SAMD15Q9P1V8 674 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 FBXL7Q9UJT9 491 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 FAN1Q9Y2M0 1017 aa4.09□□□□□ -1.75
CD44-234ENST00000531873 TMEM82A0PJX8 343 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 GNAT3A8MTJ3 354 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 B4E1Z4 1266 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 TRAF5O00463 557 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 FGF10O15520 208 aaPredicted RBP4.08□□□□□ -1.76
CD44-234ENST00000531873 BRINP1O60477 761 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 PAPLNO95428 1278 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 CPEP16870 476 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 FLT3P36888 993 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 ADCYAP1R1P41586 468 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 CEBPAP49715 358 aaPredicted RBP4.08□□□□□ -1.76
CD44-234ENST00000531873 SEPHS1P49903 392 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 MECP2P51608 486 aaKnown RBP4.08□□□□□ -1.76
CD44-234ENST00000531873 KCNAB2Q13303 367 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 NFE2Q16621 373 aaPredicted RBP4.08□□□□□ -1.76
CD44-234ENST00000531873 CLEC16AQ2KHT3 1053 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 CYP27C1Q4G0S4 372 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 RNF219Q5W0B1 726 aaPredicted RBP4.08□□□□□ -1.76
CD44-234ENST00000531873 EEF1DP3Q658K8 133 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 CREB3L3Q68CJ9 461 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 SPATS2Q86XZ4 545 aaKnown RBP4.08□□□□□ -1.76
CD44-234ENST00000531873 KSR1Q8IVT5 923 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 TP53INP2Q8IXH6 220 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 IFNL3Q8IZI9 196 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 NXPE1Q8N323 547 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 FBXL6Q8N531 539 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 IGSF22Q8N9C0 903 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 LINC00116Q8NCU8 138 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 AGBL5Q8NDL9 886 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 RCBTB1Q8NDN9 531 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 PCDH19Q8TAB3 1148 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 PI4K2BQ8TCG2 481 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 COG1Q8WTW3 980 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 DIO2Q92813 273 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 MMP19Q99542 508 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 CHMP4AQ9BY43 222 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 FOXP3Q9BZS1 431 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 CDIP1Q9H305 208 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 IFT22Q9H7X7 185 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 ATG3Q9NT62 314 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 AP5S1Q9NUS5 200 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 SLC52A1Q9NWF4 448 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 SLC5A4Q9NY91 659 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 PPARGC1AQ9UBK2 798 aaKnown RBP4.08□□□□□ -1.76
CD44-234ENST00000531873 PLAGL2Q9UPG8 496 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 APOBEC2Q9Y235 224 aaKnown RBP4.08□□□□□ -1.76
CD44-234ENST00000531873 COQ6Q9Y2Z9 468 aa4.08□□□□□ -1.76
CD44-234ENST00000531873 H3BS24 57 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 M0R2C6 588 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 WNT9AO14904 365 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 F2P00734 622 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 CEACAM5P06731 702 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 SYPP08247 313 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 GSTM1P09488 218 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 NAT1P18440 290 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 TPP2P29144 1249 aaPredicted RBP4.07□□□□□ -1.76
CD44-234ENST00000531873 NOP2P46087 812 aaKnown RBP4.07□□□□□ -1.76
CD44-234ENST00000531873 NEK2P51955 445 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 EPHB1P54762 984 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 TMPRSS15P98073 1019 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 ZNF124Q15973 351 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 TMEM177Q53S58 311 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 HSP90AB2PQ58FF8 381 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 CDKAL1Q5VV42 579 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 UBE2R2Q712K3 238 aaPredicted RBP4.07□□□□□ -1.76
CD44-234ENST00000531873 DDX53Q86TM3 631 aaKnown RBP4.07□□□□□ -1.76
CD44-234ENST00000531873 KIF18BQ86Y91 864 aa4.07□□□□□ -1.76
CD44-234ENST00000531873 SMC1BQ8NDV3 1235 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms