RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 CCDC144BQ3MJ40 725 aa5.76□□□□□ -1.49
CD44-219ENST00000525685 MTERF2Q49AM1 385 aa5.76□□□□□ -1.49
CD44-219ENST00000525685 CNKSR3Q6P9H4 555 aa5.76□□□□□ -1.49
CD44-219ENST00000525685 CPNE8Q86YQ8 564 aa5.76□□□□□ -1.49
CD44-219ENST00000525685 MARCH10Q8NA82 808 aaPredicted RBP5.76□□□□□ -1.49
CD44-219ENST00000525685 BVESQ8NE79 360 aa5.76□□□□□ -1.49
CD44-219ENST00000525685 COPS5Q92905 334 aa5.76□□□□□ -1.49
CD44-219ENST00000525685 KCNC2Q96PR1 638 aa5.76□□□□□ -1.49
CD44-219ENST00000525685 PARD6AQ9NPB6 346 aa5.76□□□□□ -1.49
CD44-219ENST00000525685 PLA2G2DQ9UNK4 145 aa5.76□□□□□ -1.49
CD44-219ENST00000525685 ADAMTS20P59510 1910 aa5.76□□□□□ -1.49
CD44-219ENST00000525685 ZC3H12DA2A288 527 aaKnown RBP5.75□□□□□ -1.49
CD44-219ENST00000525685 IQCA1LA6NCM1 817 aa5.75□□□□□ -1.49
CD44-219ENST00000525685 F8W031 263 aaPredicted RBP5.75□□□□□ -1.49
CD44-219ENST00000525685 PDPK1O15530 556 aa5.75□□□□□ -1.49
CD44-219ENST00000525685 SUSD5O60279 629 aa5.75□□□□□ -1.49
CD44-219ENST00000525685 IGSF3O75054 1194 aa5.75□□□□□ -1.49
CD44-219ENST00000525685 KCNH1O95259 989 aa5.75□□□□□ -1.49
CD44-219ENST00000525685 PAMP19021 973 aa5.75□□□□□ -1.49
CD44-219ENST00000525685 HOXA5P20719 270 aa5.75□□□□□ -1.49
CD44-219ENST00000525685 PRR5P85299 388 aa5.75□□□□□ -1.49
CD44-219ENST00000525685 LILRA6Q6PI73 481 aa5.75□□□□□ -1.49
CD44-219ENST00000525685 CRACR2BQ8N4Y2 399 aaPredicted RBP5.75□□□□□ -1.49
CD44-219ENST00000525685 MRGPRX3Q96LB0 322 aa5.75□□□□□ -1.49
CD44-219ENST00000525685 DEPDC7Q96QD5 511 aa5.75□□□□□ -1.49
CD44-219ENST00000525685 MTA3Q9BTC8 594 aa5.75□□□□□ -1.49
CD44-219ENST00000525685 RWDD3Q9Y3V2 267 aa5.75□□□□□ -1.49
CD44-219ENST00000525685 CC2D2AQ9P2K1 1620 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 TRBV23OR9-2A0A075B6M9 112 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 NPHP3-ACAD11A0A0J9YXS1 232 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 PFKLP17858 780 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 SCRN1Q12765 414 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 TARBP2Q15633 366 aaKnown RBP5.74□□□□□ -1.49
CD44-219ENST00000525685 POMZP3Q6PJE2 187 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 TRIM59Q8IWR1 403 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 LZTR1Q8N653 840 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 C20orf173Q96LM9 149 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 PWWP2AQ96N64 755 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 CCDC113Q9H0I3 377 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 EPN3Q9H201 632 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 ZCCHC4Q9H5U6 513 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 GULP1Q9UBP9 304 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 PFDN2Q9UHV9 154 aa5.74□□□□□ -1.49
CD44-219ENST00000525685 C7orf72A4D263 438 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 PLS3P13797 630 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 LIMS1P48059 325 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 CYP4F3Q08477 520 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 MBLAC2Q68D91 279 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 GTF2IRD2BQ6EKJ0 949 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 GTF2IRD2Q86UP8 949 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 CABP7Q86V35 215 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 NETO2Q8NC67 525 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 MKL1Q969V6 931 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 TSPAN17Q96FV3 270 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 IPO9Q96P70 1041 aaKnown RBP5.73□□□□□ -1.49
CD44-219ENST00000525685 MMP19Q99542 508 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 LGR4Q9BXB1 951 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 RXFP1Q9HBX9 757 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 GPRC5CQ9NQ84 441 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 SNTG2Q9NY99 539 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 CLEC1BQ9P126 229 aa5.73□□□□□ -1.49
CD44-219ENST00000525685 DBR1Q9UK59 544 aaKnown RBP5.73□□□□□ -1.49
CD44-219ENST00000525685 CDK11AQ9UQ88 783 aaPredicted RBP5.73□□□□□ -1.49
CD44-219ENST00000525685 NPHS1O60500 1241 aa5.72□□□□□ -1.49
CD44-219ENST00000525685 THBDP07204 575 aa5.72□□□□□ -1.49
CD44-219ENST00000525685 ATF2P15336 505 aa5.72□□□□□ -1.49
CD44-219ENST00000525685 SSRP1Q08945 709 aaKnown RBP5.72□□□□□ -1.49
CD44-219ENST00000525685 VMACQ2NL98 169 aa5.72□□□□□ -1.49
CD44-219ENST00000525685 MRM1Q6IN84 353 aaKnown RBP5.72□□□□□ -1.49
CD44-219ENST00000525685 ST13P5Q8NFI4 369 aaPredicted RBP5.72□□□□□ -1.49
CD44-219ENST00000525685 RNF38Q9H0F5 515 aa5.72□□□□□ -1.49
CD44-219ENST00000525685 NKX2-4Q9H2Z4 354 aa5.72□□□□□ -1.49
CD44-219ENST00000525685 CYP26B1Q9NR63 512 aa5.72□□□□□ -1.49
CD44-219ENST00000525685 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.72□□□□□ -1.49
CD44-219ENST00000525685 A0A0G2JLL6 359 aaPredicted RBP5.71□□□□□ -1.5
CD44-219ENST00000525685 ASGR2P07307 311 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 CTSWP56202 376 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 CAP1Q01518 475 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 SERINC3Q13530 473 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 RASGRF1Q13972 1273 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 LRP10Q7Z4F1 713 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 LRRC47Q8N1G4 583 aaKnown RBP5.71□□□□□ -1.5
CD44-219ENST00000525685 LINC01356Q8N9X3 169 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 TP53I13Q8NBR0 393 aaPredicted RBP5.71□□□□□ -1.5
CD44-219ENST00000525685 FRS2Q8WU20 508 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 ALG3Q92685 438 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 DPF3Q92784 378 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 PEX11GQ96HA9 241 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 DNAJC7Q99615 494 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 KRTAP4-9Q9BYQ8 210 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 XYLT2Q9H1B5 865 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 BCAS3Q9H6U6 928 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 KDM2BQ8NHM5 1336 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 CECR2Q9BXF3 1484 aa5.71□□□□□ -1.5
CD44-219ENST00000525685 SMARCA4P51532 1647 aa5.7□□□□□ -1.5
CD44-219ENST00000525685 FAM221BA6H8Z2 402 aa5.7□□□□□ -1.5
CD44-219ENST00000525685 TBX1O43435 398 aa5.7□□□□□ -1.5
CD44-219ENST00000525685 PLA2G1BP04054 148 aaKnown RBP5.7□□□□□ -1.5
CD44-219ENST00000525685 ITGAVP06756 1048 aa5.7□□□□□ -1.5
CD44-219ENST00000525685 NCAM1P13591 858 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms