RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 MESDQ14696 234 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 TSGA10IPQ3SY00 556 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 HHATQ5VTY9 493 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 APBB1IPQ7Z5R6 666 aaPredicted RBP13.89□□□□□ -0.19
USP53-209ENST00000514665 NDST4Q9H3R1 872 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 ST7Q9NRC1 585 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 ADAMTS1Q9UHI8 967 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 APBA3O96018 575 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 OSBPL5Q9H0X9 879 aaPredicted RBP13.89□□□□□ -0.19
USP53-209ENST00000514665 VPS37BQ9H9H4 285 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 DBNDD1Q9H9R9 158 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 CHD1O14646 1710 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 CLRN2A0PK11 232 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 GSG1L2A8MUP6 293 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 PPFIA4O75335 1185 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 LRCH2Q5VUJ6 765 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 TAB3Q8N5C8 712 aaPredicted RBP13.89□□□□□ -0.19
USP53-209ENST00000514665 VTI1AQ96AJ9 217 aa13.89□□□□□ -0.19
USP53-209ENST00000514665 ZCCHC17Q9NP64 241 aaKnown RBP13.89□□□□□ -0.19
USP53-209ENST00000514665 GUCY1A2P33402 732 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 RASA3Q14644 834 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 CASP8Q14790 479 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 GOLGA5Q8TBA6 731 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.88□□□□□ -0.19
USP53-209ENST00000514665 GOLGA8KD6RF30 607 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 ATP8B1O43520 1251 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 SERPINB2P05120 415 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 IFNAR2P48551 515 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 EXOSC10Q01780 885 aaKnown RBP13.88□□□□□ -0.19
USP53-209ENST00000514665 PPP2R5DQ14738 602 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 CLUL1Q15846 466 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 DGKHQ86XP1 1220 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 DPF2Q92785 391 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 CCDC17Q96LX7 622 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 ISCA1Q9BUE6 129 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 KCNF1Q9H3M0 494 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 STX2P32856 288 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 CDK8P49336 464 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 ZNF131P52739 623 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 CROCCP2Q86T23 111 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 CELF1Q92879 486 aaKnown RBP13.88□□□□□ -0.19
USP53-209ENST00000514665 GLG1Q92896 1179 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 IWS1Q96ST2 819 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 POLD4Q9HCU8 107 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 RIC8AQ9NPQ8 531 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 STK32BQ9NY57 414 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 FEZ2Q9UHY8 353 aaPredicted RBP13.88□□□□□ -0.19
USP53-209ENST00000514665 MRPL11Q9Y3B7 192 aaKnown RBP13.88□□□□□ -0.19
USP53-209ENST00000514665 SPATA31A3Q5VYP0 1347 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 CCDC160A6NGH7 325 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 PP2D1A8MPX8 630 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 SRGAP2O75044 1071 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 FOSP01100 380 aaPredicted RBP13.88□□□□□ -0.19
USP53-209ENST00000514665 ADCY8P40145 1251 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 KIF11P52732 1056 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 ARL6IP4Q66PJ3 421 aaKnown RBP13.88□□□□□ -0.19
USP53-209ENST00000514665 BRINP3Q76B58 766 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 DHX40Q8IX18 779 aaKnown RBP13.88□□□□□ -0.19
USP53-209ENST00000514665 CACNA2D3Q8IZS8 1091 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 MB21D1Q8N884 522 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 MAGOHBQ96A72 148 aaKnown RBP13.88□□□□□ -0.19
USP53-209ENST00000514665 EMILIN3Q9NT22 766 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 STK17AQ9UEE5 414 aa13.88□□□□□ -0.19
USP53-209ENST00000514665 NCAPD2Q15021 1401 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 ANKRD65E5RJM6 399 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 RABL6Q3YEC7 729 aaPredicted RBP13.87□□□□□ -0.19
USP53-209ENST00000514665 FAM186BQ8IYM0 893 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 RSRC1Q96IZ7 334 aaKnown RBP13.87□□□□□ -0.19
USP53-209ENST00000514665 BSDC1Q9NW68 430 aaPredicted RBP13.87□□□□□ -0.19
USP53-209ENST00000514665 POLD1P28340 1107 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 HSPA1LP34931 641 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 IQCB1Q15051 598 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 DEPTORQ8TB45 409 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 CSRNP1Q96S65 589 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 AZI2Q9H6S1 392 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 JRKLQ9Y4A0 524 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 ARAP3Q8WWN8 1544 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 LAMC1P11047 1609 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 ZNF609O15014 1411 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 QRICH2Q9H0J4 1663 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 A0A0G2JLW4 131 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 ATF7P17544 494 aaPredicted RBP13.87□□□□□ -0.19
USP53-209ENST00000514665 PRCPP42785 496 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 CFAP157Q5JU67 520 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 BRIP1Q9BX63 1249 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 IRX2Q9BZI1 471 aaPredicted RBP13.87□□□□□ -0.19
USP53-209ENST00000514665 MINPP1Q9UNW1 487 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 E9PCH4 1651 aa13.87□□□□□ -0.19
USP53-209ENST00000514665 CDC42BPBQ9Y5S2 1711 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 GFPT2O94808 682 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 MTF1Q14872 753 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 CTAGE3PQ8IX95 158 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 ARHGEF2Q92974 986 aaKnown RBP13.86□□□□□ -0.19
USP53-209ENST00000514665 STMN2Q93045 179 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 TEKT3Q9BXF9 490 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 POTEMA6NI47 508 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 PDE6BP35913 854 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 NIM1KQ8IY84 436 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 CCDC170Q8IYT3 715 aa13.86□□□□□ -0.19
USP53-209ENST00000514665 SH3RF3Q8TEJ3 882 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms